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Welcome to the CBIIT Speaker Series Wiki

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The NCI Center for Biomedical Informatics and Information Technology (CBIIT) Speaker Series is a bi-weekly knowledge-sharing forum featuring speakers on topics of interest to the biomedical informatics and research communities. General topics to be discussed include but are not limited to novel experimental approaches in basic research that require innovative informatics solutions; general informatics methodologies for specific tasks such as natural language processing and data exchange/integration; novel software applications (proprietary or open source); standards; ontologies; open-source development projects; human/computer interactions; future trends in biomedical informatics research and development; and CBIIT/NCIP partnerships inside and outside NCI/NIH.

Speaker Series Guidelines for Speakers: Download Word document

Please refer to the Speaker Calendar below for upcoming speakers.

Presentations: Please visit our Speaker Series Videos page or our YouTube playlist Exit Disclaimer logo to view past speakers' presentations on video.

Location: 9609 Medical Center Drive, Rockville, Maryland 20850

Questions? Please email Eve Shalley at eve.shalley@nih.gov.

RSS Feed:  You may subscribe to the "Notices" to the right, by using this RSS feed in your Feed Reader software.

Notices

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An invitation: If you are interested in presenting your work to our diverse audience of informaticists; basic, translational, and clinical researchers; software developers; and others interested in exploring the uses of informatics in cancer research, contact Eve Shalley at eve.shalley@nih.gov or 240-276-5194.

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Upcoming Speakers:

March 4: Ravi Madduri and Dr. Ian Foster, University of Chicago (tentative)

March 18: Dr. Lynne Penberthy, NCI

April 1: Dr. Ada Hamosh and Dr. Nara Sobreira, Johns Hopkins University

June 24: Dr. Javed Kahn, NCI

photo of Alexander Szalay

SYNOPSIS:

This talk will describe how science is changing as a result of the vast amounts of data we are collecting from gene sequencers to telescopes and supercomputers. This “Fourth Paradigm of Science,” predicted by Jim Gray, is moving at full speed, and is transforming one scientific area after another. The talk will present various examples on the similarities of the emerging new challenges and how Jim Gray’s vision is realized by the scientific community. Scientists are increasingly limited by their ability to analyze the large amounts of complex data available. These data sets are generated not only by instruments but also computational experiments; the sizes of the largest numerical simulations are on par with data collected by instruments, crossing the petabyte threshold this year. The importance of large synthetic data sets is increasingly important, as scientists compare their experiments to reference simulations. All disciplines need a new “instrument for data” that can deal not only with large data sets but the cross product of large and diverse data sets. There are several multi-faceted challenges related to this conversion, e.g., how to move, visualize, analyze, and in general interact with petabytes of data. 

Session details...

photo of Ann Christine Catlin photo of Dr. Marietta Harrison

SYNOPSIS:

The HUBzero platform offers unique features to support collaboration among researchers, among them the deployment of computational tools and the dissemination of scientific resources. A fundamental need for collaborative research projects is the collection, sharing and exploration of data. This presentation describes the Hub-based "data technologies" which are designed to provide interactive, web-based data sharing and have been used to create more than 40 medical and scientific research databases across 10 Hubs. We will present examples that demonstrate how Hub databases connect and serve communities across the globe – with data contribution facilities to store and preserve valuable research data, and powerful feature-rich data exploration facilities to search, navigate, drill-down, link, filter, export and analyze data. Research communities are well served by HUBzero, which unites data, tools and collaborative technologies on a single web-based platform.

Session details...

photo of Melissa Haendel

SYNOPSIS:  

Elucidating disease and dysfunction requires understanding how genotypic variation relates to phenotypic outcomes. However, data integration and retrieval are key challenges as phenotype data is largely unstructured and is encoded in a variety of formats. In addition, we only know the functional consequences of mutation for less than 40% of the human coding genome. Use of semantically structured phenotype data from model organisms so as to be comparable to human can supplement the human data to aid disease discovery. The ontologies act not only as data standards within and across species, but provide the connection of anatomical form to phenotypic outcomes — thereby enabling deep anatomical analysis to persevere, grow, and shed new light on how biological systems function across scale. The use of cross-species anatomy and phenotype ontologies can be combined with exome analysis to support disease diagnosis. The integrated data across models provisions for the development of methods to ensure quality structured phenotyping for maximal analytic utility, as well as garnering an understanding for how different organisms provide different phenotypic insights into gene function. Semantically capturing interactions with environmental perturbants (such as exposures or drug treatments) and the change in phenotypic outcomes over time is challenging, but is increasingly relevant for rare disease, cancer, and other more common disorders, as we seek to stratify patients and better support precision medicine.

Session details...

photo of Kara Hall SYNOPSIS:

Dr. Hall will begin this talk by discussing cutting-edge conceptual and empirical work that highlight trends in team science and offer insights into what makes for successful collaboration in science.  She will highlight a conceptual model for transdisciplinary research, as well as empirical findings produced by the National Cancer Institute’s SciTS (Science of Team Science) team that provide guidelines and strategies for success in team science.  She will then highlight the NCI’s Team Science Toolkit website (www.teamsciencetoolkit.cancer.gov), a “one-stop-shop” for resources to help lead, manage, evaluate, facilitate, or support team science.  She will feature key resources available through the Toolkit that can be used by investigators, academic institutions, and funders to maximize the success of team science.  Finally, Dr. Hall will discuss needed future directions to build the SciTS evidence base, and discuss current projects of the NCI SciTS team in support of these goals, including development of a systems map of the factors influencing success in team science.

Session details...

Complete List of Update Posts

Speaker Calendar

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