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The monthly NCI Imaging Informatics Webinar is organized by the Center for Biomedical Informatics and Information Technology (CBIIT) and the Cancer Imaging Program (CIP). It occurs on the first Monday of every month from 1:00 pm to 2:30 pm Eastern Time and features scientific presentations and project updates.

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Agenda of February 1, 2021 meeting

Topic
  • Orchestration of distributed image archives (Jonas De Almeida)
  • TCIA Update
  • Imaging Data Commons Update

Upcoming Calls

DateTentative Agenda
January 4, 2021No meeting
February 1, 2021
  • Orchestration of distributed image archives (Jonas De Almeida)

    Summary: Recent advances in the use of HTTP range requests to traverse bioformats*, coupled with a general move to “zero footprint” image informatics solutions, enable the creation of image archives as an exercise in governance. A particular feature of this configuration is that the images do not have to be copied or moved from their primary location. This has two interesting effects: a) the image owner remains in control of its governance; and b) training of AI classifiers can be federated across image sets that are not even shared.

    * Bremer E, Saltz J, Almeida JS. ImageBox 2 – Efficient and rapid access of image tiles from whole-slide images using serverless HTTP range requests. J Pathol Inform 2020;11:29

March 1, 2021
April 5, 2021

Presentations  and Recordings from Previous Calls

Presentations can be found at SlideShare

DateAgendaRecording
December 7, 2020NIAID TB Bioportal 

The NIAID Office of Cyber Infrastructure and Computational Biology will share their TB Portals Program, including their efforts at imaging data collection, data dissemination, tool development, and data science research. https://tbportals.niaid.nih.gov

 
  • Program introduction – Alex Rosenthal
  • Demo #1 – Alyssa Long
  • Demo #2 – Andrei Gabrielian
  • Imaging data science research – Ziv Yaniv & Gabriel Rosenfeld

MP4 file

Transcript

November 16, 2020
  • Imaging Data Commons (Andrey Fedorov, Dennis Bontempi)

MP4 file

Transcript

Slides

November 2, 2020
  • MONAI (Stephen Aylward, Prerna Dogra, Jorge Cardoso)
    • Introduction to MONAI and the MONAI Community - Stephen Aylward

    • MONAI medical deep learning capabilities and roadmap - Jorge Cardoso 

    • MONAI and clinical workflows: Clara and federated learning - Brad Genereaux

  • TCIA Update (Justin Kirby)

MP4 file

Transcript

October 5, 2020
  • Kheops (Joël Spaltenstein, Osman Ratib)
  • TCIA Update (Justin Kirby)

MP4 file

Transcript

September 14, 2020
  • Computational Imaging for Precision Medicine: A quest for generalizable AI models  (Satish Viswanath)

  • TCIA Update (John Freymann)

MP4 file

Transcript

July 6, 2020
  • Distributed Learning of Deep Learning in Medical Imaging (Daniel Rubin)
  • MedICI website (Benjamin Bearce)
  • TCIA update (John Freymann)
MP4 file
June 1, 2020
  • ACR's AI-LAB (Laura Coombs, Chris Treml)
  • TCIA update (Justin Kirby)
MP4 file
April 6, 2020
  • PathPresenter - a web-based digital pathology and image viewer (Rajendra Singh, Matthew Hanna)
  • TCIA update (Justin Kirby)
MP4 file
January 6, 2020
  • Medical Segmentation Decathlon: Generalizable 3D Semantic Segmentation (Amber Simpson)
  • Imaging Data Commons Update (Todd Pihl)
  • TCIA Update (Justin Kirby)
MP4 file
December 2, 2019Call was canceled due to RSNA
November 4, 2019Call was canceled due to conflicting meetings
October 7, 2019
  • Data Commons Overview (Todd Pihl)
  • The Imaging Data Commons (Andrey Fedorov)
  • TCIA Update (Justin Kirby)
  • NBIA Update (Scott Gustafson)
MP4 file
September 9, 2019
  • HistoQC: An Open-Source Quality Control Tool for Digital Pathology Slides (Andrew Janowczyk)
  • RIL-Contour: a Medical Imaging Dataset Annotation Tool for and with Deep Learning (Kenneth Philbrick)
  • TCIA Update (Justin Kirby)
MP4 file
August 5, 2019
  • Advanced Methods in Tissue Cytometry (Rupert Ecker)
  • Presentation by the 4D Necleome Imaging Working Group (David Grünwald)
  • TCIA Update (Justin Kirby)
MP4 file
July 1, 2019

Joint Session with the CPTAC Special Interest Group

  • CPTAC Project Overview (Chris Kinsinger)
  • CPTAC Image Data at TCIA (Justin Kirby)
  • CPTAC Proteomics Data at the Proteomics Data Commons (R. Rajesh Thangudu)
  • CPTAC Genomic Data at the Genomics Data Commons (Ana Robles)
  • Using the CPTAC Data Portal (R. Rajesh Thangudu)
MP4 file
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