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Contents
Document Information

Author: Jason Lucas/Gilberto Fragoso
Email: lucasjr@mail.nih.gov
Team: EVS
Contract: Contract number
Client: NCI CBIIT
National Institutes of Heath
US Department of Health and Human Services

Sign off

Date

Role

CBIIT or Stakeholder Organization

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The purpose of this document is to collect, analyze, and define high-level needs and features of the National Cancer Institute Center for Biomedical Informatics and Information Technology (NCI CBIIT) Protégé Release 1.4.3. This document focuses on the functionalities proposed by the product stakeholders and target users in order to make it a better product. The use-case and supplementary specifications document will detail how the framework will fulfill these needs.

Vision and Needs

The objective of this release of Protégé 1.4.3 is to provide bugs fixes found in 1.4.2 Protégé release but was not considered a showstopper for the 1.4.2 release.

Current Solution

Protégé 1.4.2 is currently in production.

Bug Fixes

GForge number
(hyperlinked)

Brief description of item

(Approved or Proposed)

29752

Generate Reports shows undesirable internal values

Approved

29753

Extra box character shows in generated report

Approved

29758

Duplicate restrictions are found in the class BRCA1_wt_Allele.

Approved

29770

Concept History Plugin - OLD_PARENT is deleted during save of concept history

Approved

29923

Unalble to search from box by hitting return key

Approved

29517

When invalid format is provided on a clone it doesn't retain previously entered Definition

Approved

30038

Change of Semantic_Type value after changing PTs

Approved

30082

Explanation Server Does Not Properly Startup for NPO Vocabulary

Approved

30111

Modeler can't create workflow tasks

Approved

General Support Activities

This section describes in detail all the related activities which must be performed for this release but do not add functionality. These activities are included in the scope and project plan due to level of effort or relative importance to the overall success of delivery of the release.

GForge number (hyperlinked)

Brief description of general support activity

Iteration
(Approved or Proposed)

Example, "Level 2 Support, integration of help and training to the user community."

Stakeholder Summary

Customer Name

Role

Interest/Need

NCI CBIIT EVS Content Editorial Team

EVS Content Management

Primary Users of Protégé. Utilize Protégé to edit EVS content

CBIIT Staff/Contractor Name

Role

Responsibilities

George Komatsoulis

NCI CBIIT

Oversees NCI CBIIT Application Infrastructure

Avinash Shanbhag

Director of CORE Engineering

Oversees NCICB caCORE Software Engineering

Sherri de Coronado

Contract Project Officer

Management/technical resource from Bioinformatics vertical. Contract management, coordination, testing, documentation

Gilberto Fragoso

Government Lead

Technical resource from Bioinformatics vertical

Technical Environment

This product uses the following technical components which have been derived from the current NCICB Technology Stack.

Component

Description

Client Application

The Protégé client is java based and provides a complete editing environment for Protégé databases, call ontologies. It uses the same plugin architecture to support extensions, called Tabs. For example, the NCI Edit Tab, Workflow, Changes, and Prompt, are examples of plugin tabs.

Java 1.5.x

Application Server

None

Database Server

MySQL

Operating System

Any that supports Java: Windows XP, Linux, OS X

[caCORE:Other]

Portable ANSI-SQL compliant relational schemas

Product Dependencies

This release is dependent on the caCORE components or products documented in the CORE Product Dependency Matrix.

[Provide additional explanation as applicable. For example, "The EVS vocabulary systems are used by the Java client to retrieve and validate concept information for naming and defining meanings."]

Out of Scope Items

Items that are out of scope were evaluated as part of the initial scoping activities for this release, and subsequently not included in the final approved scope. These items are also documented in the cumulative backlog of requirements found on the product GForge site. They include out-of-scope functional requirements (enhancements or new features), bug fixes, non-functional requirements, and general support activities.

GForge number (hyperlinked)

Brief description of item moved from the in-scope section
with brief explanation added of why it was not included in this release

Iteration during which the item
was removed from in-scope

30038

Change of Semantic_Type value after changing PTs


30305

When cloning, not escaping definition if invalid class name


30338

If only 2 N&S restriction and one is removed through merge of filler values - shows as defined

30352

Changing Concept Name in namespace and refreshing causes blank preferred name

30375

After resolving referencing class in PreRetire, does not refresh referencing classes list

30376

If rename class_name two classes, can never PreMerge them

30378

Null pointer if rename namespace while class is loaded in Merge tab

Document History

Item

Information

Document Version:

Click the Info tab. View the Recent Changes or click the link to view the page history.

Last Modified:

Refer to the first line displayed in the document window.

Project GForge site:

Project GForge site link; Docs archive, Files archive

Most current version:

Unless the display includes a notice that you are viewing a previous version, you are viewing the most current version of this Scope Document for the release indicated in the title.

Revision history:

Click the Info tab. In the Recent Changes area, click the link to view the page history.

Review history:

Click the Info tab. In the Recent Changes area, note the developer who made each change and the date and time. Refer to the Key People Directory for their roles. Click the link to view any page or to view the page history, and then click the link for a page. When the page opens, view the comments and changes made in that version.

Related documents:

Name and URL of each related document

Project Information

CBIIT Management

Role

Responsibilities

Sherri de Coronado

Contract Project Officer

Management/technical resource from Bioinformatics vertical. Contract management, coordination, testing, documentation

Gilberto Fragoso

Government Lead

Technical resource from Bioinformatics vertical

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