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CenterTCGA Platform CodeDCC Platform NameInstrument NameSequence DownloadTCGA ADF Download
broad.mit.eduABIApplied Biosystems Sequence dataApplied BiosystemsPrimersN/A
genome.wustl.eduABIApplied Biosystems Sequence dataApplied BiosystemsPrimersN/A
hgsc.bcm.eduABIApplied Biosystems Sequence dataApplied BiosystemsPrimersN/A
unc.eduAgilentG4502A_07_1Agilent 244K Custom Gene Expression G4502A-07-1Agilent 244K Custom Gene Expression G4502A-07-1FASTATCGA ADF
unc.eduAgilentG4502A_07_2Agilent 244K Custom Gene Expression G4502A-07-2Agilent 244K Custom Gene Expression G4502A-07-2FASTATCGA ADF
unc.eduAgilentG4502A_07_3Agilent 244K Custom Gene Expression G4502A-07-3Agilent 244K Custom Gene Expression G4502A-07-3FASTATCGA ADF
mskcc.orgCGH-1x1M_G4447AAgilent SurePrint G3 Human CGH Microarray Kit 1x1MAgilent SurePrint G3 Human CGH Microarray Kit 1x1MFASTATCGA ADF
broad.mit.eduGenome_Wide_SNP_6Affymetrix Genome-Wide Human SNP Array 6.0Affymetrix Genome-Wide Human SNP Array 6.0FASTATCGA ADF
genome.wustl.eduGenome_Wide_SNP_6Affymetrix Genome-Wide Human SNP Array 6.0Affymetrix Genome-Wide Human SNP Array 6.0FASTATCGA ADF
unc.eduH-miRNA_8x15KAgilent 8 x 15K Human miRNA-specific microarrayAgilent 8 x 15K Human miRNA-specific microarrayFASTATCGA ADF
unc.eduH-miRNA_8x15Kv2Agilent Human miRNA Microarray Rel12.0Agilent Human miRNA Microarray Rel12.0FASTATCGA ADF
mskcc.orgHG-CGH-244AAgilent Human Genome CGH Microarray 244AAgilent Human Genome CGH Microarray 244AFASTATCGA ADF
hms.harvard.eduHG-CGH-244AAgilent Human Genome CGH Microarray 244AAgilent Human Genome CGH Microarray 244AFASTATCGA ADF
hms.harvard.eduHG-CGH-415K_G4124AAgilent Human Genome CGH Custom Microarray 2x415KAgilent Human Genome CGH Custom Microarray 2x415KFASTATCGA ADF
genome.wustl.eduHG-U133_Plus_2Affymetrix Human Genome U133 Plus 2.0 ArrayAffymetrix Human Genome U133 Plus 2.0 ArrayFASTATCGA ADF
broad.mit.eduHT_HG-U133AAffymetrix HT Human Genome U133 Array Plate SetAffymetrix HT Human Genome U133 Array Plate SetFASTATCGA ADF
lbl.govHuEx-1_0-st-v2Affymetrix Human Exon 1.0 ST ArrayAffymetrix Human Exon 1.0 ST ArrayFASTATCGA ADF
hudsonalpha.orgHuman1MDuoIllumina Human1M-Duo BeadChipIllumina Human1M-Duo BeadChipFASTATCGA ADF
hudsonalpha.orgHumanHap550Illumina 550K Infinium HumanHap550 SNP ChipIllumina 550K Infinium HumanHap550 SNP ChipFASTATCGA ADF
jhu-usc.eduHumanMethylation27Illumina Infinium Human DNA Methylation 27Illumina Infinium Human DNA Methylation 27See ADF FileTCGA ADF
jhu-usc.eduHumanMethylation450Illumina Infinium Human DNA Methylation 450Illumina Infinium Human DNA Methylation 450See ADF FileTCGA ADF
jhu-usc.eduIlluminaDNAMethylation_OMA002_CPIIllumina DNA Methylation OMA002 Cancer Panel IIllumina DNA Methylation OMA002 Cancer Panel IFASTATCGA ADF
jhu-usc.eduIlluminaDNAMethylation_OMA003_CPIIllumina DNA Methylation OMA003 Cancer Panel IIllumina DNA Methylation OMA003 Cancer Panel ISee ADF FileTCGA ADF
genome.wustl.eduIlluminaGA_DNASeqIllumina Genome Analyzer DNA SequencingIllumina Genome Analyzer IIxN/AN/A
broad.mit.eduIlluminaGA_DNASeqIllumina Genome Analyzer DNA SequencingIllumina Genome Analyzer IIxN/AN/A
hgsc.bcm.eduIlluminaGA_DNASeqIllumina Genome Analyzer DNA SequencingIllumina Genome Analyzer IIxN/AN/A
ucsc.eduIlluminaGA_DNASeqIllumina Genome Analyzer DNA SequencingIllumina Genome Analyzer IIxN/AN/A
unc.eduIlluminaGA_DNASeqIllumina Genome Analyzer DNA SequencingIllumina Genome Analyzer IIxN/AN/A
bcgsc.caIlluminaGA_miRNASeqIllumina Genome Analyzer miRNA SequencingIllumina Genome Analyzer IIxN/AN/A
hms.harvard.eduIlluminaGA_mRNA_DGEIllumina Genome Analyzer mRNA Digital Gene ExpressionIllumina Genome Analyzer mRNA Digital Gene ExpressionN/AN/A
bcgsc.caIlluminaGA_RNASeqIllumina Genome Analyzer RNA SequencingIllumina Genome Analyzer IIxN/AN/A
unc.eduIlluminaGA_RNASeqV2Illumina Genome Analyzer RNA Sequencing Version 2 analysisIllumina Genome Analyzer IIxN/AN/A
hms.harvard.eduIlluminaHiSeq_DNASeqCIllumina HiSeq for Copy Number VariationIllumina HiSeq for Copy Number VariationN/AN/A
bcgsc.caIlluminaHiSeq_miRNASeqIllumina HiSeq 2000 miRNA SequencingIllumina HiSeq 2000 N/AN/A
unc.eduIlluminaHiSeq_RNASeqIllumina HiSeq 2000 RNA SequencingIllumina HiSeq 2000 N/AN/A
unc.eduIlluminaHiSeq_RNASeqV2Illumina HiSeq 2000 RNA Sequencing Version 2 analysisIllumina HiSeq 2000N/AN/A
unc.eduIlluminaHiSeq_TotalRNASeqV2Illumina HiSeq 2000 Total RNA Sequencing Version 2 analysisIllumina HiSeq 2000N/AN/A
jhu-usc.eduIlluminaHiSeq_WGBSIllumina HiSeq 2000 Bisulfite-converted DNA SequencingIllumina HiSeq 2000 N/AN/A
mdanderson.orgMDA_RPPA_CoreM.D. Anderson Reverse Phase Protein Array CoreM.D. Anderson Reverse Phase Protein Array CoreN/AN/A
nationwidechildrens.orgmicrosat_iMicrosatellite Instability AnalysisMicrosatellite Instability AnalysisN/AN/A
ucsc.eduSOLiD_DNASeqABI SOLiD DNA System SequencingABI SOLiD DNA System SequencingN/AN/A
broad.mit.eduSOLiD_DNASeqABI SOLiD DNA System SequencingABI SOLiD DNA System SequencingN/AN/A
hgsc.bcm.eduSOLiD_DNASeqABI SOLiD DNA System SequencingABI SOLiD DNA System SequencingN/AN/A

 

Center: Provides the name (domain) for the center that is submitting data for a particular platform. 

TCGA Platform Code: Provides the code used in The Cancer Genome Atlas (TCGA) to represent a platform. The platform code is used in archive and file names as well as file contents. 

DCC Platform Name: Provides the platform name as it is used in DCC applications.

Instrument Name: Provides the vendor's name of a particular platform. The platform name links either to the instruments's main information page or to the vendor's support page. The DCC does not collect or track vendor information. If you have trouble finding the vendor's supporting materials, we recommend you contact the vendor directly.

Sequence Download: The links provided in this column either download the FASTA file that was submitted by the related center and used to create the ADF file, or in the case of sequence-based platforms, take you to the National Center for Biotechnology Information (NCBI) Trace or Short Read Archives where you can download or search the metadata to get the primers used in the assay. Values of "Unavailable" mean that the FASTA file has not yet been posted by the related center, or in the case of sequence-based platforms, the data is not yet available at NCBI. Values of "N/A" mean that probe or primer sequence files are not applicable to the related platform and that those sequences may be available in a result file (e.g. IlluminaGA_mRNA_DGE sequences are available in the archive result files).

TCGA ADF Download: TCGA uses a modified format of the standard MAGE ADF file. TCGA ADFs are used in the analysis of the resulting data. The links provided download the TCGA ADF. Values of "Unavailable" mean that the ADF file has not yet been posted by the related center, or in the case of sequence-based platforms, the data is not yet available at NCBI. Values of "N/A" mean that ADF files are not applicable to the related platform (e.g. IlluminaGA_mRNA_DGE is not an array-based platform and so has no ADF).

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