Date: Thu, 28 Mar 2024 09:12:02 -0400 (EDT) Message-ID: <208139026.555.1711631522460@ip-10-208-26-37.ec2.internal> Subject: Exported From Confluence MIME-Version: 1.0 Content-Type: multipart/related; boundary="----=_Part_554_1121854150.1711631522449" ------=_Part_554_1121854150.1711631522449 Content-Type: text/html; charset=UTF-8 Content-Transfer-Encoding: quoted-printable Content-Location: file:///C:/exported.html
Author: Traci St.Martin/Craig Stancl
Email:<=
/strong> stmartin.traci@mayo.edu, stancl.craig@mayo.edu
Team: LexEVS
Contract: CBIIT BOA Subcontract #29XS223<=
br>Client: NCI CBIIT
National Institutes of Heath
US Department of Health and Human Services
Sign off |
Date |
Role |
CBIIT or Stakeholder Organization |
---|---|---|---|
Larry Wright |
5/6/2010 |
NCI PO & EVS Product Manager |
CBIIT: NCI EVS & Semantic Infrastructure<= /p> |
Jason Lucas |
5/6/2010 |
EVS Software Project Manager |
|
Sherri de Coronado |
5/7/2010 |
NCI PO |
CBIIT: NCI EVS & Semantic Infrastructure<= /p> |
The purpose of this document is to collect, analyze, an= d define high-level needs and features of the National Cancer Institute Cen= ter for Biomedical Informatics and Information Technology (NCI CBIIT) caCOR= E LexEVS Release 6.0. This document focuses on the functionalities proposed= by the product stakeholders and target users in order to make it a better = product. The use-case and supplementary specifications document will detail= how the framework will fulfill these needs.
The objective of this release of the LexEVS API is to d= esign and construct a reference implementation of the CTS2 specification, l= everaging LexEVS as the basis for the design and code base.
This release will address support for value sets, mappings between code = sets, support for creation of local extensions to code sets and support rel= ated to content creation and editing.
LexEVS 5.1 currently supports much of the functionality called for by th= e CTS2 Specification.
LexEVS 6.0 will provide the additional functionality to enhance LexEVS t= o meet the goals of a CTS2 Reference Implementation and requirements of the= user communities.
Each enhancement, modification or new feature is described in detail bel= ow.
GForge number |
Brief description of functional requirement <= br class=3D"atl-forced-newline"> (enhancement or new feature) |
Status |
Iteration |
---|---|---|---|
26638 | OBO Loader update for LexEVS 6.0 |
Approved |
--- |
NCIt/OWL loader update for LexEVS 6.0 |
Approved |
--- |
|
Query enhancements for CTS2 Implementation Le= xEVS 6.0 |
Approved |
--- |
|
XML Exporter update for LexEVS 6.0 |
Approved |
--- |
|
NCIm Loader updates for LexEVS 6.0 |
Approved |
--- |
|
HL7 loader update for LexEVS 6.0 |
Approved |
--- |
|
Coding Scheme Supplement Changes for LexEVS 6= .0 |
Approved |
--- |
|
Usage context enhancements for LexEVS 6.0 = |
Approved |
--- |
|
Associations (maps) enhancements for LexEVS 6= .0 |
Approved |
--- |
|
Concept Domain enhancements for LexEVS 6.0 |
Approved |
--- |
|
Value Set Enhancements for LexEVS 6.0 |
Approved |
--- |
|
Versioning enhancements for LexEVS 6.0 | Approved |
--- |
|
XML loader update for LexEVS 6.0 |
Approved |
--- |
|
ICD10 loader update for LexEVS 6.0 |
Approved |
--- |
|
ICD 9 loader update for LexEVS 6.0 |
Approved |
--- |
|
UMLS loader update to support LexEVS 6.0 <= /td> | Approved |
--- |
|
Database changes to support LexEVS 6.0 | Approved |
--- |
|
LexGrid model changes for LexEVS 6.0 |
Approved |
--- |
|
LexBIG model changes for LexEVS 6.0 |
Approved |
--- |
|
DAO layer changes for LexEVS 6.0 CTS2 Impleme= ntation |
Approved |
--- |
|
Text loader update for LexEVS 6.0 |
Approved |
--- |
|
Manifest loader update for LexEVS 6.0 |
Approved |
--- |
|
Notification enhancements for LexEVS 6.0 <= /td> | Approved |
--- |
|
OBO Exporter update for LexEVS 6.0 |
Approved |
--- |
|
Associations Exporter for LexEVS 6.0 |
Approved |
--- |
|
Protege Frames Loader update for LexEVS 6.0= p> |
Approved |
--- |
|
Loader Preferences Loader update for LexEVS 6= .0 |
Approved |
--- |
|
Authoring enhancements for CTS2 Implementatio= n LexEVS 6.0 |
Approved |
--- |
|
ISO 21090 Data Type Support enhancements for = CTS2 Implementation LexEVS 6.0 |
Approved |
--- |
|
Grid Service enablement CTS2 Implementation L= exEVS 6.0 |
Approved |
--- |
|
GEM loader update for LexEVS 6.0 |
Approved |
--- |
|
ClaML Loader update for LexEVS 6.0 |
Approved |
--- |
|
Load all MRMAP data |
Approved |
--- |
|
Java 1.6 |
Approved |
--- |
|
Control the setting of isActive via Loader pr= eferences |
Approved |
--- |
|
Modify Meta Browser Extension to support brow= sing and searching of other applicable source hierarchies. |
Approved |
--- |
|
Need to be able to identify all supported pro= perties of a particular property type. |
Approved |
--- |
|
Convert codes in entity description of anonym= ous class to names. |
Approved |
--- |
|
Ability to keep database load if indexes fail= . |
Approved |
--- |
|
Page CodedNodeGraph Results |
Approved |
--- |
|
Option to include or exclude entity types in = association search. |
Approved |
--- |
|
Examine use of LexBIG entity status |
Approved |
--- |
|
Provide XSLT transformations for backwards co= mpatability of LexBIG XML |
Approved |
--- |
|
A call for requirements for the HL7.OWL loade= r with an emphasis on top nodes |
Approved |
--- |
|
LexEVS 6.0 Load Balancing |
Approved |
--- |
|
Option to include or exclude anonymous concep= ts. |
Approved |
--- |
|
OWL/RDF Exporter for LexEVS 6.0 |
Approved |
--- |
Each bug fix included in this release is described in detail below.
GForge number |
Brief description of bug |
Status |
Iteration |
---|---|---|---|
OWL loader processing <owl:Restriction>= associations incorrectly |
Approved |
--- |
|
Focus code data is not found when referencing= external coding scheme |
Approved |
--- |
|
Include immediate parent/children when Value = Domain Definition has transitiveClosure as 'false' and referenceAssociation= is present |
Approved |
--- |
|
"Pages" links not being built correctly in Le= xEVS caCORE SDK Service |
Approved |
--- |
|
OBI load shows odd has_curation_status proper= ty |
Approved |
--- |
|
The isDefined column in the entity table shou= ld accurately reflect the source data |
Approved |
--- |
|
Incorrect Hibernate mappings of Oracle CLOB d= atabase type in caCORE SDK functions |
Approved |
--- |
|
PropertyLinks won't load without namespace be= ing supplied |
Approved |
--- |
|
Loader should not shut down on a duplicate pr= operty |
Approved |
--- |
|
Loader should not shut down on missing proper= tylink reference |
Approved |
--- |
|
OWL loader does not load concepts with parant= hesis |
Approved |
--- |
|
Problem loading MeSH and Spanish version of S= NOMED |
Approved |
--- |
|
Null-Pointer Exception Thrown when no value-D= omain content loaded. |
Approved |
--- |
|
OBI.owl loading - missing property "has curat= ion status" for concepts |
Approved |
--- |
|
OBI.owl loading - Incorrect infromation as va= lue to the property "imported from" |
Approved |
--- |
|
Results not Deserializing Properly when using= QueryModifiers on CQL Queries |
Approved |
--- |
|
|
|
|
--- |
This section describes in detail all the related requirements which must= be met for this release but do not add functionality. These requirements a= re included in the scope and project plan due to level of effort or relativ= e importance to the overall success of delivery of the release.
GForge number (hyperlinked) |
Brief description of non-functional requireme= nt |
Status |
Iteration |
---|---|---|---|
LexEVS 6.0 Project Charter |
Approved |
--- |
|
BDA Compliance Package update for LexEVS 6.0<= /p> |
Approved |
--- |
|
Release Notes for LexEVS 6.0 |
Approved |
--- |
|
LexEVS Product Documentation (Wiki Guides) fo= r LexEVS 6.0 |
Approved |
--- |
|
LexEVS NCI/NCICB website updates for LexEVS 6= .0 |
Approved |
--- |
|
LexEVS 6.0 ECCF Documentation |
Approved |
--- |
|
LexEVS 6.0 System and Software Design Documen= t |
Approved |
--- |
|
LexEVS 6.0 Design Review Package |
Approved |
--- |
|
LexEVS 6.0 Deliverable Readiness Review Packa= ge |
Approved |
--- |
|
6.0 Deployment to Dev Tier |
Approved |
--- |
|
6.0 Deployment to QA Tier |
Approved |
--- |
|
6.0 Deployment to Stage Tier |
Approved |
--- |
|
Project plan for 6.0 |
Approved |
--- |
|
6.0 Test Plan & Test Results |
Approved |
--- |
|
6.0 Use Case Document |
Approved |
--- |
|
6.0 ARC Document |
Approved |
--- |
|
6.0 Prototype 1 |
Approved |
--- |
|
6.0 Prototype 2 |
Approved |
--- |
|
6.0 Prototype 3 |
Approved |
--- |
|
6.0 Alpha 1 |
Approved |
--- |
|
6.0 Alpha 2 |
Approved |
--- |
|
6.0 Deployment to Production Tier |
Approved |
--- |
|
6.0 Production Announcements |
Approved |
--- |
This section describes in detail all the related activities which must b= e performed for this release but do not add functionality. These activities= are included in the scope and project plan due to level of effort or relat= ive importance to the overall success of delivery of the release.
GForge number (hyperlinked) |
Brief description of general support activity= |
Status |
Iteration |
---|---|---|---|
|
LexEVS Level 2 Support - integration of= help and training to the user community. |
Approved |
--- |
CBIIT Staff/Contractor Name |
Role |
Responsibilities |
---|---|---|
George Komatsoulis |
NCICB Application Infrastructure |
Oversees NCICB Application Infrastructure = |
Avinash Shanbhag |
NCICB Application Infrastructure |
Oversees NCICB caCORE Software Engineering |
Larry Wright/ Sherri de Coronado |
EVS Product Managers |
Directs EVS Projects |
Denise Warzel |
CORE Product Line Manager |
Trans-CORE requirement coordination |
Gilberto Fragoso |
Associate Director EVS Infrastructure |
Technical Direction |
Jason Lucas |
EVS Software Project Manager |
Project schedule and task management for EVS = team |
Craig Stancl |
Mayo Clinic Technical Lead |
Technical Direction and Implementation |
Traci St.Martin |
Mayo Clinic Project Manager |
Project schedule and task management |
Larry Brem |
SAIC caBIG ARCH and VCDE Technical Program Ma= nager |
Contract governance |
This product uses the following technical components which have been der= ived from the current NCICB Technology Stack.
Component |
Description |
---|---|
Client Interface |
|
Application Server |
|
Database Server |
|
Operating System |
|
[EVS:Other] |
--- |
This release is dependent on the caCORE components or products documente= d in the CORE = Product Dependency Matrix.
Items that are out of scope were evaluated as part of the initial scopin= g activities for this release, and subsequently not included in the final a= pproved scope. These items are also documented in the cumulative backlog of= requirements found on the product GForge site. They include out-of-scope f= unctional requirements (enhancements or new features), bug fixes, non-funct= ional requirements, and general support activities.
GForge number (hyperlinked) |
Brief description of item moved from the in-s=
cope section |
Iteration during which the item |
---|---|---|
Make sample programs (in the examples folder)= runnable under both local and distributed modes. Deferred due to low prior= ity. |
Inception |
|
Need to be abe to uniquely identify the codin= g scheme to which a concept belongs. Deferred due to low priority. |
Inception |
|
MedDRA loading into LexEVS. Deferred due to l= ow priority. |
Inception |
|
Spruce up MetaDataLoader GUI. Deferred due to= low priority. |
Inception |
|
Enhance LexBIG query API to fetch Association= Data objects. Deferred due to low priority. |
Inception |
|
Better validation on restrictions. Deferred d= ue to low priority. |
Inception |
|
Need an option to exclude the focused node it= self from ResolvedConceptReferenceList when resolving a CNG. Deferred due t= o low priority. |
Inception |
|
Ontology for Genetic Interval hierarchy does = not match up Protege. Deferred - This item has been discussed and is not an= issue for 6.0. |
Inception |
|
ECG Ontology missing Description, Date, Sourc= e and Creator fields. Deferred - This item has been discussed and is not an= issue for 6.0. |
Inception |
|
Can not compute root node for OBI version v1.= 0.1423. Deferred - This item has been discussed and is not an issue for 6.0= . |
Inception |
|
Lucene Max Clause Count exceeded on broad NCI= MetaThesaurus RegExp Restrictions. Deferred - This item has been discussed= and is not an issue for 6.0. |
Inception |
|
CodedNodeGraph resolveAsList distributed meth= od encountered Java heap space error. Deferred - This item has been discuss= ed and is not an issue for 6.0. |
Inception |
|
Heap space error on Doubpe Metaphone MetaThes= aurus query. Deferred - This item has been discussed and is not an issue fo= r 6.0. |
Inception |
|
REST API Features. Deferred - This item has b= een discussed and is not an issue for 6.0. |
Inception |
|
LexEVS Value Domain Support to include persis= tance of resolved value domain content. Deferred - This item has been discu= ssed and is not an issue for 6.0. |
Inception |
|
Add methods to ResolvedConceptReferencesItera= tor for supporting communications with client applications. Deferred - This= item has been discussed and is not an issue for 6.0. |
Inception |
|
Ability to query for inferred data - implemen= t ability to reason. Deferred - This item has been discussed and is not an = issue for 6.0. |
Inception |
|
Anonymous class hierarchy with unions not sho= wing up correctly. Deferred due to priority. |
Inception |
|
LexEVS 5.0 Silver Level Review. Out of Scope = - Compatibility Review process change. |
Inception |
|
LexEVS 6.0 Silver Level Compatibility Review = Submission Package. Out of Scope - Compatibility Review process change. = |
Inception |
|
|
CTS2 Semantic Profiles: Developing Term= inology Profile, HL7 Terminology Profile |
Inception |
Item |
Information |
---|---|
Document Version: |
Click the Info tab. View the Recent Changes o= r click the link to view the page history. |
Last Modified: |
Refer to the first line displayed in the docu= ment window. |
Project GForge site: |
LexEVS GForge project Docs archive, Files archive |
Most current version: | Unless the display includes a notice that you= are viewing a previous version, you are viewing the most current version o= f this Scope Document for the release indicated in the title. |
Revision history: |
Click the Info tab. In the Recent Changes are= a, click the link to view the page history. |
Review history: |
Click the Info tab. In the Recent Changes are= a, note the developer who made each change and the date and time. Refer to = the Key People= Directory for their roles. Click the link to view any page or to view = the page history, and then click the link for a page. When the page opens, = view the comments and changes made in that version. |
Related documents: |
Confluence Wiki documents: LexEVS 6.0 Development Documents=
|
CBIIT Management |
Role |
Responsibilities |
---|---|---|
Larry Wright/ Sherri de Coronado |
Co-Product Managers |
Oversees development of the product: features= , functions, definition of stakeholders, priorities within the scope, timef= rame for release |
Avinash Shanbhag |
Engineering Manager |
Oversees NCICB caCORE software engineering pr= actices, conducts design reviews, guides technical development |
Denise Warzel |
Product Line Manager |
Oversees NCICB caCORE product line. Responsib= le for overall product integration, major and minor release cycles. Support= s Product Manager. |