Date: Fri, 29 Mar 2024 02:01:42 -0400 (EDT)
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Product: caIntegrator
Version: 1.4<=
/strong>
Date: July 2012
Introduction
caIntegrator is a web-based software package that allows=
researchers to set up custom, caBIG-compatible web portals to conduct inte=
grative research, without requiring programming experience. These portals b=
ring together heterogeneous clinical, microarray and medical imaging data t=
o enrich multidisciplinary research.
Using caIntegrator, researchers can execute and save queries to identify=
and collect many types of data, combining clinical information with geneti=
c and genomic data to enable multidimensional analysis. caintegrator uses c=
aGrid analytical services such as GenePattern and BioConductor to perform a=
nalysis on the integrated study data, including clinical survival data.
Release History
- caIntegrator2 v1.0.0 -- Oct 2009
- caIntegrator2 v1.0.1 -- Jan 2010
- caIntegrator2 v1.1.0 -- Jun 2010
- caIntegrator v1.2.0 -- Sep 2010
- caIntegrator v1.3.0 -- Jun 2011
- caIntegrator v1.3.1 =E2=80=93 Nov 2011
- caIntegrator v1.4 -- July 2012
Anticipated Rele=
ases
- caIntegrator v1.5 - Feb 2013
Highlig=
hts of caIntegrator v1.4
- Automatic refresh of data between caIntegrator and caArray: For an exis=
ting study in caIntegrator, an option will be added to check for automatic =
data updates from caArray. The Study Manager will see a notification that t=
here is new data available for deployment. The Study Manger will be given a=
n option to use the new data and redeploy the study or to do nothing and ke=
ep the study as it is.
- Strong role based security in caIntegrator: Study Manager should be abl=
e to assign multiple levels of security for users based on their roles in c=
onjunction with the data privacy rules. Study manager also should be able t=
o assign row level and column level security to uploaded data.
- Single Sign-on: Users should be able to log in to one application (caAr=
ray or caIntegrator) and navigate to the other application without having t=
o log in again. This feature should be enabled at the deployment time for b=
oth applications.
- Better version control: A study manager should be able to create a new =
study similar to an existing study relatively easy. A study manager user sh=
ould be able to indicate an existing study as archived as well.
- Major technology upgrades: Jboss 5.1, Java 6, caGrid v1.5, Struts 2.3.1=
.5, and NCI build-and-deploy infrastructure (NCI Nexus repository, AntHill =
Pro 3, BDALite).
- Section 508 compliance improvements.
Features and Defects Addressed in this Release
For a complete list of new features for 1.4 refer to caIntegrator JIRA location.
Known Issues/Def=
ects
- caIntegrator v 1.4 can only pull array data from caArray v 2.5.1 and ne=
wer.
- CAINT-1070 Attempting to Add New Genomic Data Source in IE8 produces Re=
stricted Area error
Note: There is a workaround for this issue. After encountering the error, =
go to Manage Studies -> Edit Study page, and re-add the Genomic Data Sou=
rce. https://tracker.nci.nih.gov/browse/CAINT-1070<=
/a>
- There is an issue that may be seen if a user attempts to install an old=
er version of caIntegrator after installing caIntegrator 1.4 using the Wind=
ows GUI installer. Older versions of caIntegrator use JBOSS4 in the install=
ation whereas caIntegrator 1.4 uses JBOSS5. To avoid the issue the user mus=
t delete the .installer-caintegrator2 file before beginning the second inst=
allation. The .installer-caintegrator2 file can usually be found in a defau=
lt directory such as C:\Documents and Settings\username. If this file is no=
t removed JBOSS5 will be installed instead of JBOSS4 and the installation w=
ill fail.
- There is a known issue within the UPT that account administrators may e=
ncounter when they add new users. The UPT may erroneously indicate that the=
user was already created and is a duplicate. When this happens and the use=
r is not a duplicate the new user will be create as expected and the error =
message can be ignored. CSM-716, New user can be created in CSM 4.2.3 succe=
ssfully, but the message displayed in browser is wrong. See https://tracker.nci.nih.gov/browse/CSM-716.
- There is a known issue in caIntegrator; the application is unable to re=
ceive data from the AIM service at Emory. See CAINT=
-1166.
See the JIRA tracker for existing open defects, community requests,resol=
utions and feature requests: https://tracker.nci.nih.gov=
/browse/CAINT
Bug Reports, Feature Requests, And Support
Send email to Application Support to request technical suppor=
t.
To report a bug or request a new feature, refer to Rep=
ort a defect or make a feature request for caIntegrator.
See the JIRA tracker for existing open defects, community requests,resol=
utions and feature requests: https://tracker.nci.nih.gov=
/browse/CAINT
Documentation =
and Files
Links to all documentation and files can be found on the caIntegrator Documentation wiki page.
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