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NCI Thesaurus
This section describes the steps to download and install a full version of the NCI Thesaurus.
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… [LexBIG] Processing TOP Node... Retired_Kind [LexBIG] Clearing target of NCI_Thesaurus... [LexBIG] Writing NCI_Thesaurus to target... [LexBIG] Finished loading DB - loading transitive expansion table [LexBIG] ComputeTransitive - Processing Anatomic_Structure_Has_Location [LexBIG] ComputeTransitive - Processing Anatomic_Structure_is_Physical_Part_of [LexBIG] ComputeTransitive - Processing Biological_Process_Has_Initiator_Process [LexBIG] ComputeTransitive - Processing Biological_Process_Has_Result_Biological_Process [LexBIG] ComputeTransitive - Processing Biological_Process_Is_Part_of_Process [LexBIG] ComputeTransitive - Processing Conceptual_Part_Of [LexBIG] ComputeTransitive - Processing Disease_Excludes_Finding [LexBIG] ComputeTransitive - Processing Disease_Has_Associated_Disease [LexBIG] ComputeTransitive - Processing Disease_Has_Finding [LexBIG] ComputeTransitive - Processing Disease_May_Have_Associated_Disease [LexBIG] ComputeTransitive - Processing Disease_May_Have_Finding [LexBIG] ComputeTransitive - Processing Gene_Product_Has_Biochemical_Function [LexBIG] ComputeTransitive - Processing Gene_Product_Has_Chemical_Classification [LexBIG] ComputeTransitive - Processing Gene_Product_is_Physical_Part_of [LexBIG] ComputeTransitive - Processing hasSubtype [LexBIG] Finished building transitive expansion - building index [LexBIG] Getting a results from sql (a page if using mysql) [LexBIG] Indexed 0 concepts. [LexBIG] Indexed 5000 concepts. [LexBIG] Indexed 10000 concepts. [LexBIG] Indexed 15000 concepts. [LexBIG] Indexed 20000 concepts. [LexBIG] Indexed 25000 concepts. [LexBIG] Indexed 30000 concepts. [LexBIG] Indexed 35000 concepts. [LexBIG] Indexed 40000 concepts. [LexBIG] Indexed 45000 concepts. [LexBIG] Indexed 46000 concepts. [LexBIG] Getting a results from sql (a page if using mysql) [LexBIG] Closing Indexes Mon, 27 Feb 2006 01:44:22 [LexBIG] Finished indexing |
NCI Metathesaurus
Loading the Metathesaurus
This section describes the steps to download and install a full version of the NCI Metathesaurus for the LexEVS Service.
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1 | Using a web or ftp client go to the URL: http://ncicb.nci.nih.gov/download/evsportal.jsp | ||||||
2 | Select the version of NCI Metathesaurus RRF you wish to download. There may only be one. Save the file to a directory on your machine. | ||||||
3 | Extract the files from the ZIP download and save to a directory on your machine. This directory will be referred to as NCI_METATHESAURUS_DIRECTORY. RELASE_INFO.RRF is required to be present for the load utility to work. | ||||||
4 | Check that you are able to open a large number of files before starting the load.
Usually having around 10,000 available open files is sufficient. If your limit is set to low this will need to be raised. | ||||||
5 | Using the LexEVS utilities load the NCI Thesaurus:
For Windows installation use the following command:
For Linux installation use the following command:
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Resuming Loads
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Killed processes cannot be restarted. The load can recover from an application error, but not from an outside activity that stops the process |
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Step | Action | ||||||
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1 | Open the lbGUI | ||||||
2 | Find in the table the terminology with the broken or stopped load. | ||||||
3 | Highlight and double click the terminology row in the table. | ||||||
4 | On the resulting window note for the following command line execution: | ||||||
5 | Using the LexEVS utilities restart the load of the NCI Metathesaurus:
For Windows installation use the following command:
For Linux installation use the following command:
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NCI Thesaurus History
This section describes the steps to download and install a history file for NCI Thesaurus.
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