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Shell Script | Use and Function | |||||||||
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LoadMedDRA | Loads a file specified in the Medical Dictionary for Regulatory Activities (MedDRA) format. Options:
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LoadNCIHistoryLoadMIFVocabulary | Loads from an the HL7 Vocabulary mif file. Options:
Versions File Format Information:
Sample record:
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LoadOBO | Loads an OWL file. You can provide a manifest file to configure coding scheme# meta data. Options: -in,--input <uri> URI or path specifying location of the source file -mf,--manifest <uri> URI or path specifying location of the manifest file -lp,--loaderPrefs<uri> | LoadOBO | Loads a file specified in the Open Biomedical Ontologies (OBO) format. -v, --validate <int> Perform validation of the candidate resource without loading data. If specified, the '-nf', -a' and '-t' options are ignored. Supported levels of validation include: 0 = Verify document is well-formed 1 = Verify document is valid -nfa, -noFail If specified, indicates that processing should not stop for recoverable errors-a, -activate ActivateScheme on successful load; if unspecified the vocabulary is loaded but not activated. -t, --tag <id> An optional tag ID (e.g. 'PRODUCTION' or 'TEST') to assign. Example: LoadOWL2 -in "file:///path/to/somefile.owl" -v 0
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LoadOWL | Loads an OWL file.
Options:
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LoadRadLexProtegeFrames | URI or path specifying location of the pprj file. Imports from a RadLex xml file to a LexBIG repository. Requires that the pprj file be configured with reference to a RadLex xml file as follows:
Example:
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LoadUMLSSemnet | Loads the UMLS Semantic Network, provided as a collection of files in a single directory. The following files are expected to be provided from the National Library of Medicine (NLM) distribution:
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LoadFMA | Imports from an FMA database to a LexEVS repository. Requires that the pprj file be configured with a database URN, username, password for an FMA MySQL based database. The FMA.pprj file and MySQL dump file are available at http://sig.biostr.washington.edu/projects/fm/ upon registration.
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LoadHL7RIM | Converts an HL7 RIM MS Access database to a LexGrid database
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LoadMetaData | Loads optional XML-based metadata to be associated with an existing coding scheme.
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LoadMrMap | Loads mappings file(s), provided in UMLS RRF format. Specifically MRMAP.RRF and MRSAT.RRF.
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