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This section is used to record information about ontologies containing the terms referenced in the ISA-TAB-Nano files. TABLE 1 on the Investigation File ExamplesExample page shows an example of the ONTOLOGY SOURCE REFERENCE section along with example data. This section uses four ISA-TAB concepts:
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This section allows for the description of the investigation. An example of the INVESTIGATION section is in TABLE 2 on the Investigation File ExamplesExample page. The INVESTIGATION section uses nine concepts and includes concepts from ISA-TAB and extensions made in support of ISA-TAB-Nano:
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This section allows for the identification of articles (published) associated with the investigation. An example of the INVESTIGATION PUBLICATIONS section is in TABLE 3 on the Investigation File ExamplesExample page. There are seven ISA-TAB concepts used in this section:
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This section allows for the identification of the point(s) of contact for the investigation. An example of the INVESTIGATION CONTACTS section is in TABLE 4 on the Investigation File Examples page. There are 11 ISA-TAB concepts used as field names: An example of the INVESTIGATION CONTACTS section is in TABLE 4 on the Investigation File ExamplesExample page. There are 11 ISA-TAB concepts used as field names:
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This section allows for the identification of materials used in the investigation and associated studies. There are 2 concepts used in the MATERIAL section. An example of the MATERIAL section is in TABLE 5 on the Investigation File ExamplesExample page. The MATERIAL section is introduced in ISA-TAB-Nano. These concepts are described below:
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This section allows for the description of one or more studies conducted as part of an investigation. An example of the STUDY section is in TABLE 6 on the Investigation File ExamplesExample page. There are 11 concepts used in the STUDY section, seven of which are taken from ISA-TAB and four are introduced in ISA-TAB-Nano. These concepts are described below:
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This section allows for the identification of design type of the study. An example of the STUDY DESIGN DESCRIPTORS section is in TABLE 7 on the Investigation File ExamplesExample page. There are 3 concepts used in the STUDY DESCRIPTORS section. These concepts are taken from ISA-TAB.
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This section allows for the identification of articles (published) associated with the study. An example of the STUDY PUBLICATIONS section is in TABLE 8 on the Investigation File ExamplesExample page. . This section uses seven ISA-TAB concepts.
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This section allows for the identification of factors associated with the study. An example of the STUDY FACTORS section is in TABLE 9 on the Investigation File ExamplesExample page. This section has four concepts taken from ISA-TAB.
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This section allows for the identification of type of measurement and the type of technology used for the measurement in an assay that is part of a study. An example of the STUDY ASSAYS section is in TABLE 10 on the Investigation File ExamplesExample page. The STUDY ASSAYS section has 11 concepts. Out of these, 8 concepts are taken from ISA-TAB. The remaining concepts are introduced in ISA-TAB-Nano.
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This section allows for the identification of the type of protocols, and the parameters and components of a protocol used in a study. A protocol describes the formal plan of an experiment or research activity, including the objective, rationale, design, materials and methods for the conduct of the study; intervention description, and method of data analysis. An example of the STUDY PROTOCOLS section is in TABLE 11 on the Investigation File ExamplesExample page. There are 14 concepts in this section taken from ISA-TAB.
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This section allows the identification of the point of contact for a study. An example of the STUDY CONTACTS section is in TABLE 12 on the Investigation File ExamplesExample page. The STUDY CONTACTS section has 11 ISA-TAB concepts.
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The Investigation File Examples, Template, and Glossary are provided below.
- Investigation File Examples LINK TO WIKI PAGEExample
- Investigation File Template
- Investigation File Glossary
