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StepAction
1

Obtain or write an OWL2 source

An example is the OBI Ontology described here:

http://obi-ontology.org/page/Main_Page

With source currently available here:

http://svn.code.sf.net/p/obi/code/releases/2015-09-15/obi.owl

2

Create a manifest and preferences file for this source

Manifests are XML files formatted to an XML schema.  They are easiest to create when using an XML editor that can reference an XML schema.  The manifest schema is hosted here:

http://LexGrid.org/schema/2010/01/LexOnt/CodingSchemeManifest

For OWL2 the user can create one like the example for regular OWL above but add a tag for mappings that will help define namespaces in the OBI load:

Code Block
languagexml
 <supportedCodingScheme isImported="false" localId="OBI" urn="http://purl.obolibrary.org/obo/obi.owl#" xmlns="http://LexGrid.org/schema/2008/01/LexGrid/codingSchemes"/>

 

OBI_Apr2015_With_NamespaceToCS_MF.xml

OBI_StrictOWL_PF.xml

3Load source with options using option files

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