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/ImageLoader
The /ImageLoader resource is a Node application that extracts image metadata (such as width and height of the image) from the existing whole slide image and stores it in a Mongo database.
Resource | HTTP Verb | QueryEndpoint | Query Parameters(Input) | Output(Description) | Other Description | /ImageLoader|
|---|---|---|---|---|---|---|
| POST | /submitImage | case_id, File_location, subject_id | {“status”: “Success”} on success |
Example of /ImageLoader
example here
/uAIMDataLoader
Node application that converts masks (what kind of masks? Aperio? Binary masks? which conversion?) to GeoJSON objects and stores them in a Mongo database. Need input, output, and command for each.
HTTP Verb | QueryEndpoint | Query Parameters(Input) | Output(Description) |
|---|---|---|---|
POST | /submitMask | Case_id, Execution_id, Height, Width, X, Y, Type(optional) | {“jobId”: 12} |
GET | /job/:id | None | {“status”:”incomplete”} |
Example of /uAIMDataLoader
Need definitions of each query parameter. Need examples.
Resource | HTTP Verb | QueryEndpoint | Query Parameters(Input) | Output(Description) | Other Description | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
/ImageLoader | Node application that extracts image metadata (such as width and height of the image) from the existing whole slide image and stores it in a Mongo database. | ||||||||||||
POST | |||||||||||||
/submitImage | case_id, File_location, subject_id | {“status”: “Success”} on success | |||||||||||
/uAIMDataLoader | Node application that converts masks (what kind of masks? Aperio? Binary masks? which conversion?) to GeoJSON objects and stores them in a Mongo database. Need input, output, and command for each | ||||||||||||
POST | |||||||||||||
/submitMask | Case_id, Execution_id, Height, Width, X, Y, Type(optional) | {“jobId”: 12} | Need definitions of each query parameter. Need examples. | ||||||||||
GET | |||||||||||||
/job/:id | {“status”:”incomplete”} | Get the markup | |||||||||||
/ImageData | Bindaas | ||||||||||||
GET | |||||||||||||
/fileLocation | case_id | Need explanation | |||||||||||
/mpp | case_id | Need explanation | |||||||||||
/metadata | case_id | Need explanation | |||||||||||
/md5 | case_id | Need explanation | |||||||||||
POST | |||||||||||||
/json | posting what is in the mongo database about this image? What is he posting? | ||||||||||||
/MarkupData | Bindaas | ||||||||||||
GET | |||||||||||||
/multipleMarkups | Case_id, x1,y1,x2,y2,footprint,algorithms | GeoJSON | Need explanation x1,y1,x2,y2 are different than what is in caMicroscope demo (had x, y, width, height) | ||||||||||
/executionIds | case_id | List of execution IDs available for case | Need explanation. How would one get these execution IDs for a specific slide? Need to explain the difference between a caseID and an executionID–also any of the query modifiers. | ||||||||||
/uAIMTemplates | Bindaas | ||||||||||||
GET | |||||||||||||
/template | id? | Jsonform template | Schema: https://github.com/joshfire/jsonform | ||||||||||
POST | |||||||||||||
/json | |||||||||||||
/Tasks | Firebase/Kue??? | ||||||||||||
POST | |||||||||||||
/task | |||||||||||||
GET | |||||||||||||
/task | task_id |
