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Summary

Description of the profile

There were more requests for various types of extensibility than any other category of request other than improvements to tool interfaces. caBIG users and other stakeholders articulated a compelling business need to readily extend models, terminologies, and data elements in a variety of ways.This Functional Profile includes, but is not limited to, the following capability elaborations:

Capabilities

Requirements traceability

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Requirement

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Source

Derived From Requirements

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Capability

Allows the user to dynamically define the data sets they want

Gap Analysis::Extend::

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_16_5_1_24a0131_1283083368793_155965_4230
_16_5_1_24a0131_1283083368793_155965_4230
019 - Dynamic Data Set Definitions

dynamicDataSetDefinition,

Support more terminologies to be made available to the modelers, unapproved or in-review terminologies need to be advertised to help modelers suggest terms for inclusion in either NCIt or BiomedGT.

Gap Analysis::Extend::

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Anchor
_16_5_1_24a0131_1283083374322_125661_4254
_16_5_1_24a0131_1283083374322_125661_4254
043 - Support More Terminologies

localizeTerminologies,

Add

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additional data elements to applications at run time. These could be discovered in a metadata repository or, if the appropriate data element does not yet exist, it may need to be created. These newly added data elements need to then be immediately discoverable and made available through the application programmatic interface.

Gap Analysis::Extend::

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Anchor
_16_5_1_24a0131_1283083370283_657606_4233
_16_5_1_24a0131_1283083370283_657606_4233
056 - Add data elements at run time

runtimeDataElementAddition,

Support local and non public standards that can extend public regional or global standards, providing extensibility with individual element granularity

Gap Analysis::Extend::

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_16_5_1_24a0131_1283083371207_510702_4236
_16_5_1_24a0131_1283083371207_510702_4236
078 - Support Localized Standards

localizeElements,

Be capable of easily consuming information from the USHIK resource as static semantic content.

Gap Analysis::Extend::

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Anchor
_16_5_1_24a0131_1283083371998_584139_4239
_16_5_1_24a0131_1283083371998_584139_4239
095 - USHIK Semantic Content

ushikMetadataRegistryAPI,

Provide for interoperation with external research communities depending upon semantically aware networks.

Gap Analysis::Extend::

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_16_5_1_24a0131_1283083372665_477684_4242
_16_5_1_24a0131_1283083372665_477684_4242
116 - External Research Community Interoperation

externalResearchCommunityInteroperation,

Provide a standard for units (expand UCUM)

Gap Analysis::Extend::

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_16_5_1_24a0131_1283083373406_355045_4245
_16_5_1_24a0131_1283083373406_355045_4245
145.2 - Extend UCUM

ucumUnitsOfMeasureAPI,

Support adding arbitrary binary data to data element definitions

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Gap Analysis::

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Extend::

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_16_5_1_24a0131_1283083373936_654210_4251
_16_5_1_24a0131_1283083373936_654210_4251
161 - Support arbitrary binary data

binaryData,

Artifact lifecycle management and metadata requirements include the ability to: * Manage lifecycle, governance and versioning of the models, content and forms * Establish relationships and dependencies between models, content and forms * Determine provenance, jurisdiction, authority and intellectual property * Create represention and views of the information, realized through the appropriate transforms * Provide access control and other security constraints * Create annotations for better discovery and searching of artifacts * Develop usage scenarios and context for the information * Provide terminology and value set binding The artifacts are bound to the services via the service metadata. The service metadata combined with the artifacts and supporting metadata provide a comprehensive service specification. The artifact management requirements listed above are derived from the following use cases: * caEHR: The caEHR project has adopted ECCF for specifications and CDA documents for interoperability. The caEHR project requirements include the need for an infrastructure for managing all the artifacts generated during specification process, including HL7 models and documents. The caEHR project also intends to publish these artifacts for the community and vendors. The infrastructure needs to support better discovery, making all the relevant information available in the right context. * ONC and other external EHR adopters: ONC has adopted CCD and CCR for meaningful use. All national EHR implementations are expected to support forms and the semantics of these forms play a critical role in interoperability. The semantic infrastructure must provide a mechanism to create, store and manage these forms. * Clinical Trials: Clinical trials use forms to capture clinical information, and the semantics captured by these forms are critical for interoperability and reporting. The semantic infrastructure must provide a mechanism to manage the lifecycle of these forms.

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Semantic Infrastructure Requirements::

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Artifact Management::

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_16_5_1_24a0131_1283090023842_213150_4485
_16_5_1_24a0131_1283090023842_213150_4485
Artifact Lifecycle Management

dynamicDataSetDefinition, localizeTerminologies, runtimeDataElementAddition, localizeElements, ushikMetadataRegistryAPI, externalResearchCommunityInteroperation, ucumUnitsOfMeasureAPI, binaryData, dataModelExtensibility, internationalization,

There is a need to support extensions to the existing caDSR UML model and its exposure of these extensions as an API without the need for writing new caDSR code in the original application.  Local data models are dynamic; a change in previously curated data model (e.g., clinical trial schema) can take months and involve lots of people.  A faster way to update the caDSR CDEs and their value domains to better reflect the semantics of local information models is desired.  A good place to start supporting extensions is in the ability to change permissible value sets in the clinical domain.  The underlying motivations for these capabilities include: * Pathology, imaging, and clinical data elements are required to annotate biospecimens, patient/participant encounters, and patients/participants are unique to the complex disease being studied. * Even if the existing model is comprehensive enough, cutting edge research will continue to demand the comprehensive capture of new kinds of data (e.g. a novel, predicted biomarker for prostate cancer). * Users may also want to capture associated information that may be institution-specific and will not be shared (e.g. a freezer’s maintenance contract # and support end date). *Source:  * * caDSR documentation * Interview 5/24/2010, Dianne Reeves

Gap Analysis::

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caDSR::

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_16_5_1_24a0131_1283073544119_777120_4016
_16_5_1_24a0131_1283073544119_777120_4016
caDSR-7 - Support data model extensibility

dataModelExtensibility,

The Knowledge Repository should provide appropriate references and/or attributes to enable the use of all objects internationally.  This globalization requirement will be expanded upon in the CDSIC Requirements Package 2. *Source:  * * CDISC Requirements Package 1 - NCI Semantic Infrastructure, 5/28/2010, Section 2.7

Gap Analysis::CDISC::

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_16_5_1_24a0131_1283075779485_773708_4056
_16_5_1_24a0131_1283075779485_773708_4056
CDISC-17 - Support internationalization of biomedical research and healthcare data

internationalization,

Anchor
EAID_B516CD5C_5178_460d_A595_BC1ACDECE59D
EAID_B516CD5C_5178_460d_A595_BC1ACDECE59D
binaryData

Description

Support adding arbitrary binary data to data element definitions

Requirements addressed
Overview of possible operations

Anchor
EAID_15755B4A_BAA7_438d_A9E6_6FC3AB23C894
EAID_15755B4A_BAA7_438d_A9E6_6FC3AB23C894
dataModelExtensibility

Description

Support data model extensibility.

Requirements addressed
Overview of possible operations

Anchor
EAID_2D00C6FB_7424_4f0c_8495_BF133FECEC38
EAID_2D00C6FB_7424_4f0c_8495_BF133FECEC38
dynamicDataSetDefinition

Description

Allows the user to dynamically define the data sets they want

Requirements addressed
Overview of possible operations

Anchor
EAID_5956E11D_A7F8_4f9f_8B8D_406A5FE77356
EAID_5956E11D_A7F8_4f9f_8B8D_406A5FE77356
externalResearchCommunityInteroperation

Description

Provide for interoperation with external research communities depending upon semantically aware networks.

Requirements addressed
Overview of possible operations

Anchor
EAID_287D754C_827E_44e7_828F_612996254969
EAID_287D754C_827E_44e7_828F_612996254969
internationalization

Description

Support internationalization of biomedical research and healthcare data.

Requirements addressed
Overview of possible operations

Anchor
EAID_016B8D23_8DF5_4b4e_9185_7B16D1730BFF
EAID_016B8D23_8DF5_4b4e_9185_7B16D1730BFF
localizeElements

Description

Support local and non public standards that can extend public regional or global standards, providing extensibility with individual element granularity

Requirements addressed
Overview of possible operations

Anchor
EAID_8AC09A63_C352_492d_B61D_57F0F3FF1611
EAID_8AC09A63_C352_492d_B61D_57F0F3FF1611
localizeTerminologies

Description

Support more terminologies to be made available to the modelers, unapproved or in-review terminologies need to be advertised to help modelers suggest terms for inclusion in either NCIt or BiomedGT.

Requirements addressed
Overview of possible operations

Anchor
EAID_BBCDB8E0_BE0E_4b48_B996_DE65026D033D
EAID_BBCDB8E0_BE0E_4b48_B996_DE65026D033D
runtimeDataElementAddition

Description

Add additional data elements to applications at run time. These could be discovered in a metadata repository or, if the appropriate data element does not yet exist, it may need to be created. These newly added data elements need to then be immediately discoverable and made available through the application programmatic interface.

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Requirements addressed
Overview of possible operations

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EAID_

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Support local and non public standards that can extend public regional or global standards, providing extensibility with individual element granularity

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Be capable of easily consuming information from the USHIK resource as static semantic content.

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Provide for interoperation with external research communities depending upon semantically aware networks.

Anchor
EAID_B5CC5FC8_E1BF_40a2_8E74_D13574DFC0D3
EAID_B5CC5FC8_E1BF_40a2_8E74_D13574DFC0D3
ucumUnitsOfMeasureAPI

Description

Provide a standard for units (expand UCUM)

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Requirements addressed
Overview of possible operations

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Support adding arbitrary binary data to data element definitions

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EAID_

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98F28F8F_

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4f83_

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926B_

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CA9AB85B556E
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98F28F8F_

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FB0D_

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4f83_

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926B_

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CA9AB85B556E
ushikMetadataRegistryAPI

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Support data model extensibility.

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Description

Be capable of easily consuming information from the USHIK resource as static semantic content.

Requirements addressed
Overview of possible operations

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