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You can search for investigations, studies, or assays in the CSSI DCC database in the following waysby:
Search by Keyword or Phrase
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In the Search box, change the context for your search if desired. Select Investigations, Studies, or Assays. Examples of each search result follow.
In the following example, the keyword is "genomic" and the context is Investigations. Three investigations appear in the search results, along with information about each one that includes the investigation name, number of studies, number of assays, number of files, and description.
In the following example, the keyword is "genomic" and the context is Studies. Three studies appear in the search results, along with information about each one that includes the study name, name of the investigation the study is associated with, number of assays, number of files, and description. In these cases, the investigation name and study names are identical.
In the following example, the keyword is "genomic" and the context is Assays. Three assays appear in the search results, along with information about each one that includes the assay filename, name of the study that the assay is associated with, name of the investigation the assay is associated with, number of files (such as image files), and description.
Search by Related Terms
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You can search all investigations, studies, and assays in the CSSI DCC database by related terms found in relevant ontologies. The two ontologies available are Ontology for Biomedical Investigations and the NCI Thesaurus (NCIt). A search looks for matches between the term(s) you enter and either synonyms only or synonyms and subclasses found in the ontology/ies you select. The term you enter can exist in the file columns, field definitions, and placeholders of investigations, studies, or assays.
To search investigation data
- From the CSSI Data Portal home page, click the Search button or select Investigations > Search.
The Search Investigations page appears.
- In the Search box, enter a keyword or phrase.
Downloading Investigation Data
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