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  1. Log in to the CSSI DCC Portal.
  2. Select Investigations > Upload.
    The Upload ISA TAB Files page appears.
    Upload ISA Tab Files page
  3. Click New Project.
    The Project Properties page appears.

    Info

    A project is simply a container for the ISA-TAB file. It allows you to track multiple versions of ISA-TAB file uploads to this project.

    It is a best practice for each investigation to have its own project.


    Project properties page

  4. Enter a title for your new project. Note that this title and that of the ISA-TAB file that the project contains can be different.
  5. Click Save Project.
    The new project is listed under Investigation Projects.

    Info

    If the File Upload section of the page is not visible, click Open next to the project name to show it.


    Upload ISA TAB Files page with an unpublished project

    Info

    If needed now or later, click Edit to change the project name. Depending on your privileges, you may not see the Delete button.

  6. Select the file you want to upload to this project in one of the following ways:

    • Drag and drop the ISA-TAB archive file from your computer to the Drop your files here box surrounded by the dashed lines:
      Drop your files here or click to browse

    • Click the Drop your files here box image and browse to where the file is stored.
      The file is listed in the File Upload area and the status is listed as Ready.

  7. If the file is smaller than 10 GB, click Upload selected files.
    The file uploads and appears in the Investigation Projects section of the page. It is unpublished, so you must publish it to CSSI DCC.
    Project with uploaded file processed successfullyImage Modified

    Info

    If the file is larger than 10 GB, use Globus instead.

     

     

     

Uploading with Globus

Globus is a service that enables large file transfers securely. You must have an account with Globus to use it to upload investigation files to CSSI DCC. If you do not already have an account, you will be prompted to create one.

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  1. Begin uploading by creating a project and selecting a file.
  2. Click Upload with Globus button.
    If you have not yet logged into Globus, a log in page appears.
    Log in to use Globus web appImage Added

Validating the Upload

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  1. Upload at least one ISA-TAB file to a project.  
  2. If you have uploaded multiple versions of the file to the project, decide which version of the ISA-TAB file you want to publish to CSSI DCC.   
  3. Click the Preview button next to that version.
    The Publish Preview page appears.

  4. Review the uploaded file by exploring the investigation details. If you are satisfied with the content of this version, request its publication by clicking Publish this Version. If you are not satisfied or the upload generated an error, click Return to go back to your project and upload a new version of the ISA-TAB file.

  5. Check your inbox for an email with the subject line "Investigation Published." You can also confirm the published state of your file by checking the value of the Published Version field (the number should equal the number of the version you intended to publish) and the Published field (should be true) on the Upload ISA TAB Files page.