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  1. Log in to the CSSI DCC portal.
    Your email address appears in the upper-right corner of the screen.
  2. Click the arrow next to your email address to open the window and then click Change Password.
    The Change Password window appears.
    Change Password window
  3. Your current password is already supplied. Enter your new password twice and click Change Password.
    A message appears confirming that you have changed your password.
  4. Click the arrow next to your email address to open the window and then click Change Password.
    The Change Password window appears.
    Change Password windowImage Added
  5. Your current password is already supplied. Enter your new password twice and click Change Password.
    A message appears confirming that you have changed your password.

Uploading ISA-Tab Files

Before uploading a file to the CSSI DCC portal, consult the ISA-Tab specification

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. This specification describes how to structure your investigation data to create an Investigation-Study-Assay tab-delimited (ISA-Tab) archive file. This may involve configuring it using open-source software
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made for this purpose.

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Globus is a service that enables large file transfers securely. You must have an account with Globus and install

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Globus Connect Personal to use it to upload investigation files to CSSI DCC. If you do not already have an account, you are prompted to create one when you start the upload process.

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  1. If you haven't already, start Globus Connect Personal.
     
  2. Begin uploading your ISA-Tab file by creating a project in CSSI DCC and selecting a file. For more information on this process, go to Uploading ISA-Tab Files.
  3. On the Upload ISA TAB Files page, click Upload with Globus button.
    If you have not yet logged into Globus, a log in page appears.
    Log in to use Globus web app

    Info

    If you have trouble logging in, go to Globus Support

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    or send an email to support@globus.org.

    After you successfully log in, the Globus Transfer Files page appears. One of the Endpoints you configured when you installed Globus Connect Personal is already populated, though you can change it.
    Globus Transfer Files page

  4. Select the starting endpoint (on the left) where the file(s) you want to upload reside(s). Narrow down to the path if necessary.

  5. Confirm or change the destination endpoint (on the right).

  6. Click the arrow button in the direction of the source pointing to the destination to begin the transfer request.
    A message appears on the screen when the transfer request is submitted successfully. You receive an email when the request is granted and the transfer succeeds.
    Globus Transfer Files page, transfer request submitted successfully

    The uploaded, unpublished file appears in the Investigation Projects section of the page.

    Upload ISA TAB Files, Investigation Projects section

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