Page History

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1. NCI Report Writer (LexEVS RMI, mySQL DB)
   1. 28 templates supporting
      1. CDRH
      2. CTS
      3. CareLex
      4. FDA
      5. GAIA
      6. GENC
      7. GUDID
      8. ICS
      9. NCI
      10. NICHD
      11. SPL
      12. eStability
   2. standalone Java program to generate ancillary Neoplasm Core formats
2. Protege
   1. NCI edit tab
   2. Pellet reasoner
   3. Lucene query
   4. Reporting
      1. Export fields based on a Lucene Query
      2. Export fields based on a list of codes
      3. Export a report based on a root concept
3. FormatProtegeReport (POJO)
   1. Extract terms, defs, properties of interest from a Protege report
4. GenerateCDISC Java program (OWL API wrapper)
   1. ADaM
   2. CDASH
   3. Glossary
   4. SDTM
   5. SEND
5. nci-diff-CDISC Java program (POJO)
   1. Changes between CDISC updates
6. ODM_Converter (Scala)
   1. Format CDISC odm.xml, html, PDF

Communications

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/Publications:

1. NCI Meta browser https://ncim.nci.nih.gov
2. NCI terms browser - 
   1. https://nciterms.nci.nih.gov
   2. https://ncit.nci.nih.gov 
3. CDISC Tracker for new term requests - https://tracker.nci.nih.gov/projects/CDISC/summary
4. Term Suggestion - https://nciterms.nci.nih.gov 
5. NCI_Thesaurus email account
6. Cancer.gov 
   1. https://www.cancer.gov/research/resources/terminology
   2. JIRA https://tracker.nci.nih.gov/browse/
7. Github issue tracker for Protege https://github.com/NCIEVS
8. EVS download page - https://cbiit.cancer.gov/evs-download
9. Wiki
   1. EVS-LexEVS - LexEVS
   2. EVS public - EVS Wiki
   3. EVS private - https://wiki.nci.nih.gov/display/EVSproj
   4. Protege - Protege and NCI Protege

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1. ProtegeKbQA Java program (OWL API wrapper)
   1. 24 tests supporting business rules and quality control of data in Thesaurus baselines
   2. Metrics about Thesaurus data
2. OWLDiff (OWL API wrapper)
   1. Diff report of two baselines
3. OWLSummary Java program (OWL API wrapper)
   1. Details report
   2. Summary report
   3. Used for statistics and generation of the MEME config file
4. LexEVSCompare Java program (LexEVS RMI)
   1. Matching performed by the editors
5. TopBraid (COTS)
   1. Conversion of CDISC reports to OWL/RDF
6. NDFRT_File_Processing (POJO)
   1. Process and post monthly NDFRT files
   2. Process and post monthly SPL files
7. Wusage - for extracting web usage of EVS related web sites and FTP
   1. https://sitestats.nci.nih.gov
8. OWL Conversion programs
   1. HGNCtoOWL
   2. CTCAEtoOWL
   3. NDFRTtoOWL
9. Stardog

APIs

1. LexEVS java api
   1. 6.4 (Java 7)
   2. 6.5 (Java 8)
2. CTS2
3. EVSRESTAPI
4. SPARQL
   1. https://sparql-evs.nci.nih.gov/sparql 
   2. https://sparql-evs.nci.nih.gov/ctrp