Page History
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ExportLgXML | Exports content from the repository to a file in the LexGrid canonical XML format.
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ExportOBO | Exports content from the repository to a file in the Open Biomedical Ontologies (OBO) format.
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ExportOwlRdf | Exports content from the repository to a file in OWL format.
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LexEVS Loader Scripts
LoadLgXML | Loads a vocabulary file, provided in LexGrid canonical xml format.
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LoadNCIHistory
LoadMedDRA | Loads a file specified in the Medical Dictionary for Regulatory Activities (MedDRA) format. Options:
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-r, -replace If not specified, the provided history file will be added into the current history database; otherwise the current database will be replaced by the new content.
Load Example:
LoadNCIHistory -in
"file:///path/to/history.file"
-vf
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Validation Example:
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LoadOBO
Loads a file specified in the Open Biomedical Ontologies (OBO) format.
Options:
Load CUI Example:
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releaseDate | isLatest | releaseAgency | releaseId | releaseOrder | entityDescription |
Sample record:
28 -NOV- 05 | false | [http: //nci.nih.gov] | 05.10e | 26 | Editing of NCI Thesaurus 05.10e was completed on October 31, 2005. Version 05.10e was October's fifth build in our development cycle. |
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LoadMetaData | Loads optional XML-based metadata to be associated with an existing coding scheme.
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-v
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LoadMIFVocabulary | Loads from an |
the HL7 Vocabulary mif file. |
Note
Load of the NCI Thesaurus should be performed via the LoadNCIThesOWL counterpart, since it will allow more precise handling of NCI semantics.
Options:
Options:
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- 0 = Verify document is well-formed
- 1 = Verify document is valid
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LoadMetaData
Loads optional XML-based metadata to be associated with an existing coding scheme.
LoadMrMap | Loads mappings file(s), provided in UMLS RRF format. Specifically MRMAP.RRF and MRSAT.RRF.
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LoadNCIHistory | Imports NCI History data to the LexEVS repository.
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Note
If the URN and version values are unspecified, a list of available coding schemes will be presented for user selection.
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LoadMetadata
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LoadMetadata -in
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LoadMrMap
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LoadOBO | Loads a file specified in the Open Biomedical Ontologies (OBO) format.
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LoadOWL | Loads an OWL file. Note Load of the NCI Thesaurus should be performed via the LoadNCIThesOWL counterpart, since it will allow more precise handling of NCI semantics. Options:
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LoadOWL2 | Loads an OWL file. You can provide a manifest file to configure coding scheme# meta data.
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LoadResolvedValueSetDefinition | Loads Value Set Definition content, provided in LexGrid canonical xml format.
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LoadText | Loads a file in LexGrid Text format. Options: -in,--input <uri> URI or path specifying location of the source file -d, --delimiter <character> defaults to tab the character used to delimit pair or triple components and the nesting. -mf,--manifest <uri> URI or path specifying location of the manifest file. -v, --validate <int> Perform validation of the candidate resource without loading data. If specified, the '-a' and '-t' options are ignored. Supported levels of validation include: 0 = Verify document is valid -a, --activate ActivateScheme on successful load; if unspecified the vocabulary is loaded but not activated. -t, --tag <id> An optional tag ID (e.g. 'PRODUCTION' or 'TEST') to assign.
Load Example: | |
LoadUMLSHistory | Loads UMLS History
-in,--input <uri> URI or path specifying location of the source file -v, --validate <int> Perform validation of the candidate resource without loading data. If specified, the '-a' and '-t' options are ignored. Supported levels of validation include: 0 = Verify document is valid -a, --activate ActivateScheme on successful load; if unspecified the vocabulary is loaded but not activated. -r, --replace Replace exisiting file. -t, --tag <id> An optional tag ID (e.g. 'PRODUCTION' or 'TEST') to assign.
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Loads mappings file(s), provided in UMLS RRF format. Specifically MRMAP.RRF and MRSAT.RRF.
Options:
-inSat,-input <uri> URI or path specifying location of the MRSAT source file.
Example:
LoadMrMap -inMap
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Special Batch Loading Functions
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