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Excerpt

Jim Robinson, Helga Thorvaldsdottir, Mary Goldman, Alexander Krasnitz

This special 90-minute session of the CBIIT Speaker Series will feature demos of three tools that were developed through funding by the Informatics Technology for Cancer Research (ITCR) Program.

  • Jim Robinson from UCSD and Helga Thorvaldsdottir from the Broad Institute will present the Integrative Genomics Viewer

UCSC Xena

Single Cell Genome Viewer (Profiling and visualization of tumor genomes on a single-cell level) — Sparse genomic profiling of multiple individual cancer cells is a tool of choice for characterization of genetic heterogeneity and clonal structure in tumors. I will outline a computational and visualization workflow we have developed for this purpose and provide evidence for diagnostic utility of single-cell genomics in prostate cancer
  • Mary Goldman from UC Santa Cruz will present the Xena Functional Genomics Browser
  • Alexander Krasnitz from Cold Spring Harbor Lab will present the Single Cell Genome Viewer

Session details...


BIOS:

Jim Robinson is a Principal Software Engineer at the University of California, San Diego. His work over the past 20 years has focused on the design and development of bioinformatics and visualization software for researchers and clinicians in the biomedical community. Jim has been the architect and lead developer of the Integrative Genomics Viewer (IGV) since its inception.

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