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Comment: Revising "ISA-Tab archive file" based on email from Corinne.

The CSSI DCC Portal validates uploaded ISA -Tab files archives using standards and conventions described in the ISA-Tab specification Exit Disclaimer logo . The ISA tools site Exit Disclaimer logo provides additional technical information about validating ISA -Tab filesarchives.

If your file ISA archive does not meet those standards and conventions, you may encounter an error when you upload it to the CSSI DCC Portal. Your file ISA archive will likely process successfully but the application will detail the error in the Status column. You may then want to address the error and upload again. A sample error message follows:

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CSSI DCC looks for errors in three types of files that are commonly in an ISA -Tab archive:

  • Data files: If there are more than 1000 missing data files for an assay file, only the first 1000 will be listed.
  • Additional files: If files are found in your uploaded archive, but were not referenced in the ISA-Tab metadata, they are listed.
  • External file references: The upload summary lists all of the external file references in your uploaded archive and notes whether or not they are verified.

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Click the link in the status message. A page opens that details the status of the three types of files in the uploaded investigation fileISA archive.

The Missing Files section details each missing data file referenced in the metadata of the assays:

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