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Date

Attendees


  • Todd, Amy, Christina, Dawn, Paula, Shaying, Heather, Phil, Erika, Cheryl

  • Regrets:  Jeff, Elaine 

Discussion items

ItemWhoNotes
ICDC Next PhaseTodd
  • ICDC has 2 years left, time to start thinking about what's next
    • Will be discussed in more depth in the Steering Committee
    • Possible goals?
      • ICDC hosting a reference genome(s)?
      • Other ground truth data?
      • Tool/analysis information?
White PaperAll
  • Initial Outline on Box: https://nih.app.box.com/folder/137612017625
  • Goals?  
  • Schedule?
  • Housing variant file on ICDC
    • Variant call file, filters, parameters to identify the variants
    • Will 10,000 Dog project allow ICDC to host the file
    • Dawn has an in-house panel as well (60-70 dogs)
    • Shaying - 15TB genomic and sequence data that could be in ICDC
    • SNPs for 10 pure breeds
  • Amy - in the middle of a sequencing push on a collection of normal tissues
    • May need a discussion if these are useful
    • Will be submitting normal tissue to ICDC
  • Revisit at next BP meeting as worst case
    • Recirculate outline
    • Try to schedule a meeting to organize paper
    • HAVE A DEADLINE
  • Variant call file
    • What was the issue with the ones available
    • Heather - Have an in-house file housed at Broad
    • Is there a way to merge all the dataset?
      • Also would need some curation
    • Establish a variant standards group?
      • Todd to start organizing
OtherTodd
  • Gina Kufel will start as ICDC TPM on June 21st
  • July and August meetings?
    • July - Goal is paper workflow/outline
    • August - No meeting

Action items

  •  Todd to organize a variant group, Include Greg