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- Display the Add or Edit page for synthesis material of a sample, as described in (link TBD).
- In the Materials tab of the Sample (sample name) Synthesis page, click Add, or click Edit next to the item you want to edit. The Add page or Edit page for that item appears.
- (Protocol and description details TBD.)
- (Materials details TBD.)
- Select a protocol and provide a description. (TBD: What guidance can we provide here for specifying a protocol & description?)
In the Materials panel, click Add and fill in the following information.
Complete How to Material Type* Select the type of material comprising this nanomaterial (required).
Chemical Name* Enter the chemical name given to the atomic or molecular structure that composes the center of the nanoparticle (required). PubChem Data Source/PubChem ID Include Page PubChem data source PubChem data source (TBD: This panel is similar to composition, but Dev GUI doesn't have PubChem ID field. Is that intentional?)
Amount/Amount Unit Include Page Amount unit Amount unit Molecular Formula Type Include Page Molecular formula type Molecular formula type Molecular Formula Enter the chemical formula of the nanoparticle. Supplier Name Select the supplier name. (TBD: What guidance can we provide here for selecting the supplier name?) Lot Specify the lot. (TBD: What guidance can we provide here for specifying the lot?) Material Description Enter a description for the composing element. Inherent Functions Next to Inherent Functions, click Add to expand the panel. An inherent function is the characteristic behavior of a sample that results from the chemical and physical composition and properties of the entity. For details, refer to (link TBD).
- Click Save Material Element.
- Add Add files. For details, refer to (link TBD).
- Click Update.
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- Display the Add or Edit page for synthesis functionalization of a sample, as described in (link TBD).
- In the Functionalization tab of the Sample (sample name) Synthesis page, click Add, or click Edit next to the item you want to edit. The Add page or Edit page for that item appears.
- (Protocol and description details TBD.)
- Select a protocol and provide a description. (TBD: What guidance can we provide here for specifying a protocol & description?)
In the Functionalization Materials panel, click Add and fill in the following information:
Complete How to Functionalization Type* Select the type of material comprising this nanomaterial (required).
Chemical Name* Enter the chemical name given to the atomic or molecular structure that composes the center of the nanoparticle (required). PubChem Data Source/PubChem ID Include Page PubChem data source PubChem data source (TBD: This panel is similar to composition, but Dev GUI doesn't have PubChem ID field. Is that intentional?)
Amount/Amount Unit Include Page Amount unit Amount unit Molecular Formula Type Include Page Molecular formula type Molecular formula type Molecular Formula Enter the chemical formula of the nanoparticle. Functionalization Description Enter a description for the composing element. Inherent Functions Next to Inherent Functions, click Add to expand the panel. An inherent function is the characteristic behavior of a sample that results from the chemical and physical composition and properties of the entity. For details, refer to (link TBD).
- Click Save Functionalization Element. (Functionalization details TBD.)
- Add files. For details, refer to (link TBD).
- Click Update.
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- Display the Add or Edit page for synthesis purification of a sample, as described in (link TBD).
Fill in the information as described in the following table:
Panel What to Do Purification Type Fill in the general information about the purification.
Select a Purification Type. (TBD: Do What guidance can we need to provide guidance here for choosing interim or final?)
Select a Protocol. (TBD: In the Dev tier, no values show up in this drop-down list for me. Do we need to provide guidance for choosing a value?)
Specify the Yield. (TBD: Do What guidance can we need to provide guidance here for specifying a value?)
Design and Methods Fill in the design and methods information about the purification.
In the Design and Methods Description field, enter a description for the purification design and methods.
Info title Adding extra lines If you include an extra line between text in the Design and Methods Description, the line separation is preserved when you save or update the purification information.
- Next to Technique and Instruments, click Add to expand the panel. For details on specifying techniques and instruments used to derive the data, refer to (link TBD).
Finding Click Add to expand the panel. Add data findings and supporting documentation relating to the purification. Import as many .csv files as you wish or add derived data manually. For details, refer to (link TBD).
Analysis and Conclusion Enter any relevant analyses and conclusions reached by the data. Files Click Add to expand the panel. (TBD: On the Dev tier, nothing happens when I click Add in the purification Files panel.) Add supporting documentation relating to the purification. Import as many files as you wish. For details, refer to (link TBD).
- Click Update.
Defining Inherent Functions
You can add inherent functions to a sample. (TBD: You can add as many as you wish?)
To add each function:
- In the Add or Edit page for synthesis (materials or functionalization) of a sample, expand the Inherent Functions panel, as described in (links TBD).
Fill in the following information.
Complete How to Type Include Page Function type Function type Description Enter any additional function information for the nanomaterial entity that the form does not already include. - Click Save Inherent Function.
Defining Purification Techniques and Instruments
You can add purification techniques and instruments to a sample. (TBD: You can add as many as you wish?)
To add each technique:
- On the Add or Edit page for synthesis purification of a sample, expand the Technique and Instruments panel, as described in (link TBD).
Fill in the following information.
Technique and Instruments Panel Description Technique*
Include Page Technique Technique Abbreviation Include Page Abbreviation Abbreviation Description Enter a description of the technique and instruments. Instruments
(TBD: On the Dev tier, nothing happens when I click Add next to Instruments.)Include Page Instrument Instrument - When you are finished, click Save Technique. (TBD: On the Dev tier, nothing happens when I click Save Technique.)
Adding Data Findings to Synthesis Purification
You can add purification data findings to a sample. (TBD: You can add as many as you wish?)
To add each finding:
- On the Add or Edit page for synthesis purification of a sample, expand the Finding panel, as described in (link TBD).
- Under Data and Conditions, add findings such as laboratory conditions, pH, or temperature. You can add data manually or you can import as many .csv files as needed. (TBD: May I have a sample CSV file to import, to test these instructions?)
To import a file of data values
Save a spreadsheet of data values to a csv (comma-separated value) file.
Click Import csv. Select the data file and follow the prompts to add it. The system adds columns and data under Data and Conditions.
To add the data values manually
Specify the number of columns and rows for the matrix, and click Update.
Add the data values to the rows.
Whether you imported values or added values manually, you can preface each data value with one of the following: Maintain the default, equal to (=), or select greater than (>), less than (<), or infinity (approximate). (TBD: On the Dev tier, these drop-down lists are empty.)
- To define a column, click an underlined column heading. The Column Definition panel appears.
- Select a Column Type, Datum or Condition.
Select a Column Name or select other and add a new one. You can add up to three cell viability Column Names, including cell viability, cell viability B, and cell viability C. You can further identify the column with the Column Value Type.
For Column Type Datum, (Column Name options TBD: What column types are available for each column name?).
For Column Type Condition, (Column Name options TBD: Same table as for Characterization?).
To further identify a column, select a Column Value Type. Once the column information is saved, the Column Type is shown in parentheses after the Column Name, such as cell viability (mean). (TBD: In Dev tier, for condition, no values show up in this drop-down list for me.)
- Select a Column Value Unit, or select other and add one.
If you want the same value to fill all rows in a column, add a Constant Value. For Column Value Type, boolean, enter a Constant Value of 1 for true and 0 for false.
Click Save. The system updates the columns. If needed, click Set Column Order to change the order of the column headings in the matrix.
- Click Save in the Finding panel.
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