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Due to limitations in X-windows, it is likely that you will need to copy the zip package down to your local machine in order to do the client configuration steps.  Configuration details can be found at NCI Protege 5 desktop set up.

Once the client is configured you will want to zip it back up.  If working on a Mac you will want to make sure to exclude the .DS_Store hidden files : zip -r nci-protege-V3.9.0-dev2.zip nci-protege-V### -x "*.DS_Store"

Copy the package and copy it to the secure FTP at caftps2.nci.nih.gov.  You will need to use SFTP and log in using your NIH username and password. 

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