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Consider whether you want to download a single collection or multiple collections:
- To download a single collection: Plan to specify the path for that collection in the command.
- To download multiple collections: In your local system, use a command line editor (such as vi editor) to create a file that lists the paths for all of the DME collections you want to download, delimited by newline. Plan to use the -f option to specify that file in the command.
Run the following command:
Panel borderColor silver borderStyle solid Clipboard AllowLineWrap true (dm_download_collection_dbgap aspera [optional parameters] [DME data path] <Aspera destination> <destination-path> [Aspera credentials file path])
The following table describes each parameter:
Parameter Description [-D <REST-response>]
An optional parameter, specifying a path and filename in your local system. The system always creates a response file:
- If you specify this parameter, the system saves the response from the server to the specified file in the specified location.
- If you omit this parameter, the system saves the file as download-collection-response-header.tmp in your home directory.
[-o <output-json-file>]
An optional parameter, specifying a path and filename in your local system. The system always creates an output file:
- If you specify this parameter, the system saves the output to the specified file in the specified location.
- If you omit this parameter, the system saves the output as download-collection-response-message.json.tmp in your home directory.
If the command is successful, the output file is empty.
[-f <paths-file>]
or
[DME data path]
One or more paths within DME. Select one of the following methods to specify the collection or collections that you want to download:
- To specify multiple collections, use the -f parameter to specify a path and filename in your local system, of a file that lists the paths for all of the DME collections you want to download, delimited by newline.
- To specify a single collection, specify the path for the DME collection you want to download.
<Aspera destination>
The name of the Aspera destination. <destination path>
The path to and the name of the folder in the destination bucket. Do not begin the path with a slash. If the destination folder structure you specify does not already exist, DME creates it. [Aspera credentials file path]
The location of the credentials file.
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