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...
OBO Class | OBO Entity | LexGrid Model Element | Notes | ||
---|---|---|---|---|---|
Document Header | format-version |
| Not mapped. | ||
Document Header | data-version | CodingScheme.representsVersion | Creates a codingSchemeVersion and SystemRelease record. If not specified, then hard coded "UNASSIGNED" | ||
Document Header | version | CodingScheme.representsVersion | Deprecated - use data-version if present. | ||
Document Header | date |
| Not mapped. | ||
Document Header | saved-by |
| Ignored but included if contained in the remark entity. | ||
Document Header | auto-generated-by |
| Ignored but included if contained in the remark entity. | ||
Document Header | subsetdef |
| Not mapped. | ||
Document Header | import |
| Deprecated - Imports are used to assemble a larger document from smaller. | ||
Document Header | typeref |
| Deprecated. | ||
Document Header | synonymtypedef |
| Not mapped. | ||
Document Header | idspace |
| Not mapped.The idspace is a triple - localName, URN and description. | ||
Document Header | default-relationship-id-prefix |
| Not mapped. | ||
Document Header | id-mapping | CodingScheme.supportedAssociation | This is more generalized than the LexGrid model, as it supports mapping between any id's. Note that its primary purpose, however, is to handle supportedAssociation. | ||
Document Header | remark | CodingScheme.entityDescription | Will combine multiple remark entities into the entityDescription. | ||
Document Header | default-namespace | codingScheme.codingScheme | Will use default-namespace if provided; otherwise will use filename without the extension. | ||
Document Header | default-namespace | codingScheme.formalName | Will use default-namespace if provided; otherwise will use filename without the extension. | ||
Document Header | default-namespace | codingScheme.registeredName | Combination of "urn:lsid:bioontology.org:" and if provided, the value in "default-namespace"; but if not will use filename without the extension. | ||
|
| codingScheme.defaultLanguage | Hardcoded "en" | ||
|
| codingScheme.isNative | Hardcoded "true" | ||
Stanza | id | CodedEntry.conceptCode |
| ||
Stanza | name | CodedEntry.entityDescription |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="4c3393f2e741446e-39a37205-4f724ccb-9455880a-ec2082feafb1d54c2d8cf8d9"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.presentation['textualPresentation'].text |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="bcc82afdd66e2f64-d6bb6b98-404f478d-84358d9f-210b24c8adee0230b3ed10e8"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.presentation['textualPresentation'].isPreferred = true |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | alt_id |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="45e0ad17ce8e6d71-5515f5a8-4e1d4ed4-86ab93b6-24c312f861ac9f5d4a0d1c64"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.property['alt_id'].propertyId |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="2c8c458f78927da5-d158afae-41984a8a-9b9cb10c-314cd31852991e1a01a933f9"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.property['alt_id'].text |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | is_anonymous | CodedEntry.isAnonymous = true |
| ||
Stanza | is_obsolete | CodedEntry.isActive = false |
| ||
Stanza | def | CodedEntry.definition |
| ||
|
| CodedEntry.definition.isPreferred = true |
| ||
Stanza | def.dbxref |
| See dbxref | ||
Stanza | comment | CodedEntry.comment.text |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0cb7f5fca60626ac-adf25dd9-43ee4183-8b688264-9aeca461876dd43ac37d5884"><ac:plain-text-body><![CDATA[ | Stanza | subset | property[subset tag] | See subsetdef | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="58cd2fdf63f92d7f-82a2f963-42484dc5-bd3fba91-1a88694a590b37abf0447055"><ac:plain-text-body><![CDATA[ | Stanza | synonym | presentation['textualPresentation'].text |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="ae66e0f0c31dbbce-d5d8cbe9-47694ed6-b47fb6d8-9e2985d27ca6a9b72473d0db"><ac:plain-text-body><![CDATA[ | Stanza | synonym.scope | presentation['textualPresentation'].degreeOfFidelity |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="47526b19055320c8-347550ec-49924f68-baf08711-e289f79a57cf6090c7663383"><ac:plain-text-body><![CDATA[ | Stanza | synonym.type | presentation['textualPresentation'].representationalForm |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | synonym.dbxref |
| (see dbxref) | ||
Stanza | exact_synonym |
| See synonym | ||
Stanza | narrow_synonym |
| See synonym | ||
Stanza | broad_synonym |
| See synonym | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="9d7b2171a49b89dd-421d60e5-4c0441fe-9c94a36b-448d8ca79253c510d1f47f0c"><ac:plain-text-body><![CDATA[ | Stanza | xref | associations.['mapsTo'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | xref_analog |
| See synonym | ||
Stanza | xref_unk |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="30d0e451057b63ae-fa96a217-4f5f4ca5-a2efab1a-bd116ca31da909fa993322b1"><ac:plain-text-body><![CDATA[ | Stanza | is_a | associations.['hasSubtype'] | Reverse of the source and target. | ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | is_a.namespace |
| If present, the supplied namespace becomes the owning "codingScheme". | ||
Stanza | is_a.derived | associations.hasSubtype.associationQualifier | If present, need to include derived in the supportedAssociationQualifiers section | ||
Stanza | intersection_of |
| Processed the same way that OWL intersection operator is processed. This includes creation of anonymous sets. | ||
Stanza | union_of |
| Same as OWL | ||
Stanza | disjoint_from |
| Same as OWL | ||
Stanza | relationship | associations. |
| ||
Stanza | relationship.not_necessary | associations..associationQualifier |
| ||
Stanza | relationship.inverse_necessary | associations..associationQualifier |
| ||
Stanza | relationship.namespace |
| If present, the supplied namespace becomes the owning "codingScheme". | ||
Stanza | relationship.derived | associations..associationQualifier |
| ||
Stanza | relationship.cardinality | associations..associationQualifier |
| ||
Stanza | relationship.maxCardinality | associations..associationQualifier |
| ||
Stanza | relationship.minCardinality | associations..associationQualifier |
| ||
Stanza | is_obsolete | codedEntry.isActive = false |
| ||
Stanza | replaced_by |
|
| ||
Stanza | consider |
| Not Mapped | ||
Stanza | use_term |
| (deprecated) | ||
dbxref | dbxref name | CodedEntry..source |
| ||
| supportedSource |
| dbxref name format is inconsistent. In most cases, it can be the localName of supportedSource, but special processing may be necessary in the case of URL's, etc | ||
dbxref | dbxref description |
| Not mapped. | ||
dbxref | trailing modifiers |
| Not mapped. | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="2dd97c4178e39d98-a81de4f8-4d534285-b2a2b6a5-a2374153c7df3b7f2fe97596"><ac:plain-text-body><![CDATA[ | typeDef Stanza | domain | associations.['has_domain'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="939e4964caf985f1-af178cd6-4863479f-b8f98b25-f1ee1f03b4e24f455cfd742d"><ac:plain-text-body><![CDATA[ | typeDef Stanza | range | associations.['has_range'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f1c5cb59a3fc4354-2feb8bbe-4bf34340-a1b5af4b-b971bf1189a6b115660de255"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_cyclic | property['is_cyclic'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a2211da983e66c72-b14faab4-4bd543d7-95c296e5-a64ea011c94f42e0bcfd614e"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_reflexive | property['is_reflexive'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
|
| association.isReflexive |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0a07d12d13728eb9-aef34e4f-4fd14066-8374a34d-aecfa76a40774adb0fd60f21"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_symmetric | property['is_symmetric'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
|
| association.isSymmetric |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="7ff2281fe95ad82e-f1dc6bf5-4ca549ec-81be84cc-d0a1a5f9a8ec2938be6f34b7"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_transitive | property['is_transitive'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
|
| association.isTransitive |
| ||
typeDef Stanza | inverse_of | association.inverse |
| ||
instance stanza | id | same rules as general stanza | same rules as general stanza | ||
instance stanza | name | same rules as general stanza | same rules as general stanza | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="47c66b45aa069a0c-2daefbf6-4adf422e-b68f95d5-b8a654fe804075d288e1d411"><ac:plain-text-body><![CDATA[ | instance stanza | instance_of | association['has_instance'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
instance stanza |
| CodedEntry.property.property="" | data type properties go in Coded Entry property section |
...
HL7 Table | HL7 Column | LexGrid Model Element | Notes | Intentionally Not mapped | Outstanding issues | ||
---|---|---|---|---|---|---|---|
Model | <modelID> | <codingSchemeName> |
|
|
| ||
| <name> | <formalName> |
|
|
| ||
| <registeredName> |
|
|
|
| ||
| <defaultLanguage> | en* |
|
|
| ||
| <versionNumber> | <representsVersion> |
|
|
| ||
| <isNative> | 0* |
|
|
| ||
| <approximateNumberofConcepts> | Result of count on concept bearing table? |
|
|
| ||
| <firstRelease> | MISSING |
|
|
| ||
| <modifiedRelease> | MISSING |
|
|
| ||
| <deprecated> | MISSING |
|
|
| ||
| <description> | <entityDescription> |
|
|
| ||
| <copyright> | MISSING |
|
|
| ||
VCS_code_system | codeSystemId | codingScheme.registeredName | Moved to metadata file. |
|
| ||
| codeSystemType | commonTypes::Properties | This is an HL7 specific code system property to distinguish internal vs external code systems. Moved to metadata file. |
|
| ||
| codeSystemName | concept.conceptCode | Moved to metadata file. |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="cf8673fccdee76fc-23b25ce3-4c934884-bbe2b5ee-c530040aab0a4f249f50b6c6"><ac:plain-text-body><![CDATA[ |
| codeSystemName | concept.presentation['textualPresentation'].text |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
| fullName | codingScheme.formalName |
|
|
| ||
| description | codingScheme.entityDescription | Moved to metadata file. |
|
| ||
| releaseId | codingScheme.representsVersion | Moved to metadata file. |
|
| ||
| copyrightNotice | codingScheme.copyright | Moved to metadata file. |
|
| ||
| literal('en') | codingScheme.defaultLanguage | Moved to metadata file. |
|
| ||
VCS_concept_code_xref | internalId |
|
|
|
| ||
| Concept Code | concept.conceptCode |
| RIM db column conceptCode2 |
| ||
| Case Difference | commonTypes::Properties | Basically a property to outline whether there are case differences in the Concept Code or not (mainly used, but not restricted tor units of measure) | RIM db column codeInstance |
| ||
| Status | concept.isActive=(conceptStatus=='A'?) |
| RIM db column conceptStatus |
| ||
|
| concept.conceptStatus | Not used by HL7. A = isActive, R = retired |
|
| ||
VCS_concept_designation | internalId |
| foreign key |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="790730bd48d1489e-f3fbf224-457d4d76-95b9a14c-e371a812a9a10f5935575eb5"><ac:plain-text-body><![CDATA[ |
| designation | concept.presentation['textualPresentation'].text |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
| designationSeq |
|
|
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="07a6396fa38c74d9-3d390dfb-4b834e77-bc6a9738-9061048455eb9a6577a28718"><ac:plain-text-body><![CDATA[ |
| language | concept.presentation['textualPresentation'].language | Can be omitted if language = default language |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="06ef47aeaa0b7d16-f1b6dc55-42ec44fe-94d09d7c-ea57e900cc1fbf62b5177de1"><ac:plain-text-body><![CDATA[ |
| preferredForLanguage | concept.presentation['textualPresentation'].isPreferred |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="62ac59470548b629-db5e2bf1-4d754526-b8738fcd-074ed3ef96030f57911a5537"><ac:plain-text-body><![CDATA[ | VCS_concept_description | internalId | with(codeSystem[deref(internalId)].concept[deref(internalId)]).definition | foreign key |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="bc7caabd3ef5ef12-9b93bd7b-4b044202-b36d8268-e5b207047aa1ef7d339b1ced"><ac:plain-text-body><![CDATA[ |
| description | concept.presentation['textualPresentation'].text |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e20f1036d6c962e8-f8ba67d2-42d0405a-9f40b1a3-892cddd89e55045aefe1f59b"><ac:plain-text-body><![CDATA[ |
| language | concept.presentation['textualPresentation'].language |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="2673c400fbe667be-3da42f88-430c46fd-ab3785e4-ae1d54f60f309a085da4be88"><ac:plain-text-body><![CDATA[ |
| literal('true') | concept.presentation['textualPresentation'].isPreferred |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="291f191bc23fa572-157356bf-46dd4eb5-bdbda39a-e689f9f918364afdedd7b6f2"><ac:plain-text-body><![CDATA[ |
| uniqueId() | concept.presentation['textualPresentation'].propertyId |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="fda0499b11b554a0-f3025d07-42784d5c-8d878237-217d4ea8172e4a5f6b9d6947"><ac:plain-text-body><![CDATA[ |
| literal('definition') | concept.presentation['textualPresentation'].property |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
VCS_concept_property | internalId |
| foreign key |
|
| ||
| propertyCode | concept.property.property |
|
|
| ||
| propertySeq |
| Currently not used by HL7 |
|
| ||
| propertyValue | concept.property.text |
|
|
| ||
| language | concept.property.language |
|
|
| ||
VCS_concept_relationship | relationCode | association.association |
|
|
| ||
| sourceInternalId | associationInstance.sourceConcept |
|
|
| ||
| targetInternalId | associationTarget.targetConcept |
|
|
| ||
Model | modelID | systemRelease.releaseId |
|
|
| ||
| name | service.service |
|
|
| ||
| versionNumber | service.version |
|
|
| ||
| lastModifiedDate | systemRelease.releaseDate |
|
|
| ||
| developingOrganization | systemRelease.releaseAgency |
|
|
| ||
| committeeID |
|
|
|
| ||
| description | systemRelease.entityDescription |
|
|
| ||
| concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) | systemRelease.releaseURN |
|
|
| ||
| literal('true') | systemRelease.isLatest | Also have to set the prior release isLatest to false |
|
| ||
| preceding-sibling/releaseOrder + 1 | systemRelease.releaseOrder |
|
|
| ||
Model | modelID | commonTypes::Properties |
|
|
| ||
(Special mapping for NCI) | name | codingScheme.localName |
|
|
| ||
| versionNumber | codingScheme.representsVersion |
|
|
| ||
| lastModifiedDate | commonTypes::Properties |
|
|
| ||
| developingOrganization | commonTypes::Properties |
|
|
| ||
| committeeID |
|
|
|
| ||
| description | codingScheme.entityDescription |
|
|
| ||
| concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) | codingScheme.registeredName |
|
|
| ||
| literal('true') | commonTypes::Properties | Also have to set the prior release isLatest to false |
|
| ||
| preceding-sibling/releaseOrder + 1 | commonTypes::Properties |
|
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="76f5a502586871a0-ede5aaaa-43f74e12-b9b28e9e-95c98367b0fefe4d410266ed"><ac:plain-text-body><![CDATA[ | RIM_vocabulary_domain | vocDomain | codingscheme["VocabularyDomain"].concept.conceptCode | Vocabulary Domains are carried in a code system of vocabulary domains. |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="00733bb9d56a8c6c-b5985cba-40264468-ba68b790-5be14ec1cca3a75a338cb0b3"><ac:plain-text-body><![CDATA[ |
|
| codingscheme["VocabularyDomain"].concept.presentation["textualPresentation"].text | preferredPresentation |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="762e530534b73259-44a0ac15-479e479f-a74db3a4-9e21cd8cafcfae1e4c7aa8b6"><ac:plain-text-body><![CDATA[ |
| description | codingscheme["VocabularyDomain"].concept.definition.text | preferredDefinition for code |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="ab6ca2726186ff33-21ac1f73-4ae44cc1-a777a25d-c1078d22858f1ac8c3ab066c"><ac:plain-text-body><![CDATA[ |
| restrictsDomain | codingscheme["VocabularyDomain"].association["hasSubtype"].sourceConcept | Should this be hasSubtype or something else? |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="8176f934b3b88349-ad198b3b-4eec4fea-aba98c65-77e58d5cdb68d57920c673fc"><ac:plain-text-body><![CDATA[ |
|
| codingscheme["VocabularyDomain"].association["hasSubtype"].targetconcept = vocDomain |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d4d9451a69668066-930f3cb2-48714644-ba5894a0-baa765e53655e0ba42c4fd01"><ac:plain-text-body><![CDATA[ | VOC_code_reference | usedToBuildValueSet | with(valueDomain[registeredName=current()/.]) |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
| referencesConceptCode | ...valueDomainEntry/conceptCode | 1) id is synthesized |
|
| ||
| referencesInternalId |
| Internal id's aren't exposed in lexGrid |
|
| ||
| relationship | ...valueDomainEntry/includeChildren = (relationship == 'hasSubtype') | Won't deal w/ non-hasSubtype relationships, but HL7 doesn't have any. |
|
| ||
| includeReferencedCode | ...valueDomainEntry/isSelectable |
| Not in current implementation |
| ||
| leafOnly |
| Not used in HL7 Model |
|
| ||
| directChildrenOnly |
| Not used in HL7 Model |
|
| ||
| isHeadCode |
| Only used when referenced in VOC_value_set_constructor. |
|
| ||
| referencesCodeSystem | .../valueDomainEntry.codingScheme | Shortcut in HL7 model. Must = VOC_value_set.basedOnCodeSystem |
|
| ||
| arbitraryUniqueValue() | .../valueDomainEntry.id |
|
|
| ||
VOC_registered_code_system | codeSystemId |
| VOC_registered_code_system isn't currently transferred to Lexgrid |
|
| ||
| sponsor |
|
|
|
| ||
| publisher |
|
|
|
| ||
| versionReportingMethod |
|
|
|
| ||
| licensingInformation |
| This field should really be transfer to copyright? |
|
| ||
| inUMLS |
|
|
|
| ||
| systemSpecificLocatorInfo |
|
|
|
| ||
| uri |
|
|
|
| ||
| isExternal |
|
|
|
| ||
VOC_value_set | valueSetId | valueDomain.registeredName |
|
|
| ||
| valueSetName | valueDomain.valueDomain | Name is the key in LexGrid, and is optional in HL7 - will need to be addressed. |
|
| ||
| basedOnCodeSystem | valueDomain.defaultCodingScheme | Optional in HL7, required in LexGrid. |
|
| ||
| description | valueDomain.entityDescription |
|
|
| ||
| definingExpression |
| Not used. |
|
| ||
| allCodes |
|
|
|
| ||
| isTaxonomicSet |
| No mapping available |
|
| ||
| valueSetAuthority |
| Included in valueSetID |
|
| ||
| valueSetNumber |
|
|
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a9968e25512592cc-ce898768-4cc94677-88468f31-bcf98cb257b7e2e1999e86ac"><ac:plain-text-body><![CDATA[ | VOC_value_set_constructor | usedToBuildValueSet | new valueDomainEntry(parent = valueDomain[valueSetId=current()/.],id=unique()) |
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| includesOrExcludesSet | valueDomainEntry.includesValueDomain |
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| includeHeadCode | valueDomainEntry.isSelectable |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="6aab4a16b4ed4e22-67b1eafa-4f9d41d1-9ad2b6b1-f291eff78e6cba896a90f9d9"><ac:plain-text-body><![CDATA[ |
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VOC_vocabulary_domain_value_set | representsVocDomain | (selector) |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="2f12289a2b267560-d22fe4e4-428946cb-bd33a0f5-d1f089a8348bdc5b5ffa6c6c"><ac:plain-text-body><![CDATA[ |
| definedByValueSet | codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].text | have to get 'representsVocDomain' into supportedProperty header |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c534856f363146d2-f64f9eab-447644cb-8aae8fa7-d08ac181c4e6e06afc0c4f8e"><ac:plain-text-body><![CDATA[ |
| appliesInContext | codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].usageContext | Have to get all the contexts in the VocabularyDomain supportedContext header |
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VCS_release_version | releaseId | codingSchemeVersion.version | Note: this is not the way that things are done at the moment. At the moment, VCS_release_versions are loaded into systemRelease. Entered if one or more concept/relationship change. |
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| valueDomainVersion.version | Set iff one or more value sets change |
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| literal("false") | codingSchemeVersion.isComplete | All versions are delta's in this model |
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| releaseAgency |
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| releaseDate | codingSchemeVersion.versionDate |
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| valueDomainVersion.versionDate |
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| description | codingSchemeVersion.entityDescription |
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| valueDomainVersion.entityDescription |
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| editorID |
| There is no place for these currently. |
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| forWhomID |
| There is no place for these currently. |
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| concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) |
| This corresponds to the containing system release when the sytem release occurs. It is empty until then. |
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...
Source Definition |
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| Comments | ||||||
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| Column | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 |
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Line | 1 |
| <codingSchemeName> | <codingSchemeId> | <defaultLanguage> | <formalName> | version |
| description | copyright | This must be the first line. It contains the coding scheme metadata. | ||||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d4014d25647d82a4-8b71507e-4258468a-a6a6bd9a-30165b919e2d65abf3a22d1e"><ac:plain-text-body><![CDATA[ |
| 2 |
| [<code>] | <name> | description |
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| Beginning of concepts in coding scheme. | ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="9478eaef642588de-74a18ad7-48e44b37-abcdb3ef-be3086c6f9cfca7e9f77a148"><ac:plain-text-body><![CDATA[ |
| 3 |
| [<code>] | <name> | description |
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| Represent hierarchical 'hasSubtype' relationship nesting (name hasSubtype name) | ]]></ac:plain-text-body></ac:structured-macro> |
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Text Element | LexGrid | Comments |
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Coding Scheme |
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codingSchemeName | codingScheme.codingSchemeName |
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codingSchemeId | codingScheme.codingSchemeId |
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defaultLanguage | codingScheme.defaultLanguage |
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formalName | codingScheme.formalName |
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| version | codingScheme.representsVersion | Optional |
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source | codingScheme.source | Optional |
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description | codingScheme.entityDescription | Optional |
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copyright | codingScheme.copyright | Optional | ||||||
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| Concepts |
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code | concept.conceptCode | Optional | ||||||
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| name | concept.conceptName |
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description | concept.entityDescription |
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...