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OBO Class | OBO Entity | LexGrid Model Element | Notes | ||
---|---|---|---|---|---|
Document Header | format-version |
| Not mapped. | ||
Document Header | data-version | CodingScheme.representsVersion | Creates a codingSchemeVersion and SystemRelease record. If not specified, then hard coded "UNASSIGNED" | ||
Document Header | version | CodingScheme.representsVersion | Deprecated - use data-version if present. | ||
Document Header | date |
| Not mapped. | ||
Document Header | saved-by |
| Ignored but included if contained in the remark entity. | ||
Document Header | auto-generated-by |
| Ignored but included if contained in the remark entity. | ||
Document Header | subsetdef |
| Not mapped. | ||
Document Header | import |
| Deprecated - Imports are used to assemble a larger document from smaller. | ||
Document Header | typeref |
| Deprecated. | ||
Document Header | synonymtypedef |
| Not mapped. | ||
Document Header | idspace |
| Not mapped.The idspace is a triple - localName, URN and description. | ||
Document Header | default-relationship-id-prefix |
| Not mapped. | ||
Document Header | id-mapping | CodingScheme.supportedAssociation | This is more generalized than the LexGrid model, as it supports mapping between any id's. Note that its primary purpose, however, is to handle supportedAssociation. | ||
Document Header | remark | CodingScheme.entityDescription | Will combine multiple remark entities into the entityDescription. | ||
Document Header | default-namespace | codingScheme.codingScheme | Will use default-namespace if provided; otherwise will use filename without the extension. | ||
Document Header | default-namespace | codingScheme.formalName | Will use default-namespace if provided; otherwise will use filename without the extension. | ||
Document Header | default-namespace | codingScheme.registeredName | Combination of "urn:lsid:bioontology.org:" and if provided, the value in "default-namespace"; but if not will use filename without the extension. | ||
|
| codingScheme.defaultLanguage | Hardcoded "en" | ||
|
| codingScheme.isNative | Hardcoded "true" | ||
Stanza | id | CodedEntry.conceptCode |
| ||
Stanza | name | CodedEntry.entityDescription |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e8c6616b748b13a0-0a832e6b-4b2a4161-92a99e17-d9d74c2406886e8fe24bfb9d"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.presentation['textualPresentation'].text |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="25fe4494f7760f6a-a74943ab-49a041cf-80e9a35c-08e4d08f43913e5395379a28"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.presentation['textualPresentation'].isPreferred = true |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | alt_id |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="52fc3926cf759ebc-e825d12f-40714ada-8ab3b087-2b012f4a9ab8ee708d4288ab"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.property['alt_id'].propertyId |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c0e8df9f9794bd03-99c3773c-434847d9-b7babe40-0eeda64aad70202cfe1ba9af"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.property['alt_id'].text |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | is_anonymous | CodedEntry.isAnonymous = true |
| ||
Stanza | is_obsolete | CodedEntry.isActive = false |
| ||
Stanza | def | CodedEntry.definition |
| ||
|
| CodedEntry.definition.isPreferred = true |
| ||
Stanza | def.dbxref |
| See dbxref | ||
Stanza | comment | CodedEntry.comment.text |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="7d7d71dc7b53e6e3-7c98857f-4eb847cf-8de69e6c-1e07ec2491adcacae1a91976"><ac:plain-text-body><![CDATA[ | Stanza | subset | property[subset tag] | See subsetdef | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="3bc779e4ddcbd38c-ac873775-40a44bfc-86f0af1a-20e3070e713cb6b8e9327882"><ac:plain-text-body><![CDATA[ | Stanza | synonym | presentation['textualPresentation'].text |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0f8c6a667c357648-8629ab92-43ac4510-a0aeb409-53ba51c7f20cfbf7cd1cb8c1"><ac:plain-text-body><![CDATA[ | Stanza | synonym.scope | presentation['textualPresentation'].degreeOfFidelity |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="9ca4149d88e649fd-e546d521-4cac4ef2-83fe8cea-4309dc6a98af83a3d20cb054"><ac:plain-text-body><![CDATA[ | Stanza | synonym.type | presentation['textualPresentation'].representationalForm |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | synonym.dbxref |
| (see dbxref) | ||
Stanza | exact_synonym |
| See synonym | ||
Stanza | narrow_synonym |
| See synonym | ||
Stanza | broad_synonym |
| See synonym | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="73ce009ed91446b0-ad3c84ee-43c843ad-a59da433-baa30310518c16d2d8dae0ef"><ac:plain-text-body><![CDATA[ | Stanza | xref | associations.['mapsTo'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | xref_analog |
| See synonym | ||
Stanza | xref_unk |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e3a61057d8211a5b-088a280e-47844cfd-9b5dad7b-f886790102d4eadccf4bacd8"><ac:plain-text-body><![CDATA[ | Stanza | is_a | associations.['hasSubtype'] | Reverse of the source and target. | ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | is_a.namespace |
| If present, the supplied namespace becomes the owning "codingScheme". | ||
Stanza | is_a.derived | associations.hasSubtype.associationQualifier | If present, need to include derived in the supportedAssociationQualifiers section | ||
Stanza | intersection_of |
| Processed the same way that OWL intersection operator is processed. This includes creation of anonymous sets. | ||
Stanza | union_of |
| Same as OWL | ||
Stanza | disjoint_from |
| Same as OWL | ||
Stanza | relationship | associations. |
| ||
Stanza | relationship.not_necessary | associations..associationQualifier |
| ||
Stanza | relationship.inverse_necessary | associations..associationQualifier |
| ||
Stanza | relationship.namespace |
| If present, the supplied namespace becomes the owning "codingScheme". | ||
Stanza | relationship.derived | associations..associationQualifier |
| ||
Stanza | relationship.cardinality | associations..associationQualifier |
| ||
Stanza | relationship.maxCardinality | associations..associationQualifier |
| ||
Stanza | relationship.minCardinality | associations..associationQualifier |
| ||
Stanza | is_obsolete | codedEntry.isActive = false |
| ||
Stanza | replaced_by |
|
| ||
Stanza | consider |
| Not Mapped | ||
Stanza | use_term |
| (deprecated) | ||
dbxref | dbxref name | CodedEntry..source |
| ||
| supportedSource |
| dbxref name format is inconsistent. In most cases, it can be the localName of supportedSource, but special processing may be necessary in the case of URL's, etc | ||
dbxref | dbxref description |
| Not mapped. | ||
dbxref | trailing modifiers |
| Not mapped. | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="2d981dadcb8cb477-39b4eafc-4953424c-a05db8a7-847d07c56f0ad8c8363038b5"><ac:plain-text-body><![CDATA[ | typeDef Stanza | domain | associations.['has_domain'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f56dcf8309b5a7fe-f419b284-4e4a4cbb-a187af48-a4ecfd2f7f74f58a9a2c4e64"><ac:plain-text-body><![CDATA[ | typeDef Stanza | range | associations.['has_range'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="80d2dc9dbc8e017f-3890a0cb-42574883-b14884c6-b2cd164b7fa1155e937865cc"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_cyclic | property['is_cyclic'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f889f80dbdb55dda-df235e88-41594e73-a1d0bab3-023e1885a37fa3d801277ebe"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_reflexive | property['is_reflexive'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
|
| association.isReflexive |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="72d31c70b68469df-1ac47903-49af426d-811aa3ed-a5cddb954f1fc048045d905a"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_symmetric | property['is_symmetric'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
|
| association.isSymmetric |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1cbc496a7f5ade0e-0c391218-43104fa7-985d9471-fee34d0a52ade312934e6aeb"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_transitive | property['is_transitive'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
|
| association.isTransitive |
| ||
typeDef Stanza | inverse_of | association.inverse |
| ||
instance stanza | id | same rules as general stanza | same rules as general stanza | ||
instance stanza | name | same rules as general stanza | same rules as general stanza | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="77e032e8febd417b-48487fff-4dfa46ab-9f9b9f56-79c5cd78b66ee66e6b1f138d"><ac:plain-text-body><![CDATA[ | instance stanza | instance_of | association['has_instance'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
instance stanza |
| CodedEntry.property.property="" | data type properties go in Coded Entry property section |
...
HL7 Table | HL7 Column | LexGrid Model Element | Notes | Intentionally Not mapped | Outstanding issues | ||
---|---|---|---|---|---|---|---|
Model | <modelID> | <codingSchemeName> |
|
|
| ||
| <name> | <formalName> |
|
|
| ||
| <registeredName> |
|
|
|
| ||
| <defaultLanguage> | en* |
|
|
| ||
| <versionNumber> | <representsVersion> |
|
|
| ||
| <isNative> | 0* |
|
|
| ||
| <approximateNumberofConcepts> | Result of count on concept bearing table? |
|
|
| ||
| <firstRelease> | MISSING |
|
|
| ||
| <modifiedRelease> | MISSING |
|
|
| ||
| <deprecated> | MISSING |
|
|
| ||
| <description> | <entityDescription> |
|
|
| ||
| <copyright> | MISSING |
|
|
| ||
VCS_code_system | codeSystemId | codingScheme.registeredName | Moved to metadata file. |
|
| ||
| codeSystemType | commonTypes::Properties | This is an HL7 specific code system property to distinguish internal vs external code systems. Moved to metadata file. |
|
| ||
| codeSystemName | concept.conceptCode | Moved to metadata file. |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="4503f7ba8fbd3eaa-ba827e61-468c42c6-b3719129-442535ece93cb5c1f0076d73"><ac:plain-text-body><![CDATA[ |
| codeSystemName | concept.presentation['textualPresentation'].text |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
| fullName | codingScheme.formalName |
|
|
| ||
| description | codingScheme.entityDescription | Moved to metadata file. |
|
| ||
| releaseId | codingScheme.representsVersion | Moved to metadata file. |
|
| ||
| copyrightNotice | codingScheme.copyright | Moved to metadata file. |
|
| ||
| literal('en') | codingScheme.defaultLanguage | Moved to metadata file. |
|
| ||
VCS_concept_code_xref | internalId |
|
|
|
| ||
| Concept Code | concept.conceptCode |
| RIM db column conceptCode2 |
| ||
| Case Difference | commonTypes::Properties | Basically a property to outline whether there are case differences in the Concept Code or not (mainly used, but not restricted tor units of measure) | RIM db column codeInstance |
| ||
| Status | concept.isActive=(conceptStatus=='A'?) |
| RIM db column conceptStatus |
| ||
|
| concept.conceptStatus | Not used by HL7. A = isActive, R = retired |
|
| ||
VCS_concept_designation | internalId |
| foreign key |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="17dda459aca3b882-7f80931b-40374933-92fcb194-88c2a5ba666eb56e38f5edc6"><ac:plain-text-body><![CDATA[ |
| designation | concept.presentation['textualPresentation'].text |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
| designationSeq |
|
|
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="be7fb8266246ddab-d65c91e9-43c94840-81afbecf-09cba6710885630e26653579"><ac:plain-text-body><![CDATA[ |
| language | concept.presentation['textualPresentation'].language | Can be omitted if language = default language |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="18831d6248275fbe-a9d698dd-43eb4af3-8bc38799-d15f0b4748eaa8156339bf38"><ac:plain-text-body><![CDATA[ |
| preferredForLanguage | concept.presentation['textualPresentation'].isPreferred |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="bdc1881a6f61fe0b-d51e8999-48f94a78-b3f48009-e810a4f4796a373bd22839af"><ac:plain-text-body><![CDATA[ | VCS_concept_description | internalId | with(codeSystem[deref(internalId)].concept[deref(internalId)]).definition | foreign key |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="4274852585343dda-9a1c2a70-4ba14fb7-9c05989e-3077c9ff37494b7fbcee79b4"><ac:plain-text-body><![CDATA[ |
| description | concept.presentation['textualPresentation'].text |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="7cd05f3e4efaa0ba-78cf0471-4a994945-8c928555-e5bb93b8b7dce38ed653b073"><ac:plain-text-body><![CDATA[ |
| language | concept.presentation['textualPresentation'].language |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a71ae652a57317a7-df5e3e73-47a9402e-bffd8374-9f397105b15081fbd9fc98a3"><ac:plain-text-body><![CDATA[ |
| literal('true') | concept.presentation['textualPresentation'].isPreferred |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="4efec95f9166931c-64d509e1-44eb4aad-9c92847d-99eba665a90055a991736eca"><ac:plain-text-body><![CDATA[ |
| uniqueId() | concept.presentation['textualPresentation'].propertyId |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="b93f4b5dae14e24a-eed96984-429d45a1-af739b8f-c96e647eae7bd6fce3649341"><ac:plain-text-body><![CDATA[ |
| literal('definition') | concept.presentation['textualPresentation'].property |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
VCS_concept_property | internalId |
| foreign key |
|
| ||
| propertyCode | concept.property.property |
|
|
| ||
| propertySeq |
| Currently not used by HL7 |
|
| ||
| propertyValue | concept.property.text |
|
|
| ||
| language | concept.property.language |
|
|
| ||
VCS_concept_relationship | relationCode | association.association |
|
|
| ||
| sourceInternalId | associationInstance.sourceConcept |
|
|
| ||
| targetInternalId | associationTarget.targetConcept |
|
|
| ||
Model | modelID | systemRelease.releaseId |
|
|
| ||
| name | service.service |
|
|
| ||
| versionNumber | service.version |
|
|
| ||
| lastModifiedDate | systemRelease.releaseDate |
|
|
| ||
| developingOrganization | systemRelease.releaseAgency |
|
|
| ||
| committeeID |
|
|
|
| ||
| description | systemRelease.entityDescription |
|
|
| ||
| concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) | systemRelease.releaseURN |
|
|
| ||
| literal('true') | systemRelease.isLatest | Also have to set the prior release isLatest to false |
|
| ||
| preceding-sibling/releaseOrder + 1 | systemRelease.releaseOrder |
|
|
| ||
Model | modelID | commonTypes::Properties |
|
|
| ||
(Special mapping for NCI) | name | codingScheme.localName |
|
|
| ||
| versionNumber | codingScheme.representsVersion |
|
|
| ||
| lastModifiedDate | commonTypes::Properties |
|
|
| ||
| developingOrganization | commonTypes::Properties |
|
|
| ||
| committeeID |
|
|
|
| ||
| description | codingScheme.entityDescription |
|
|
| ||
| concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) | codingScheme.registeredName |
|
|
| ||
| literal('true') | commonTypes::Properties | Also have to set the prior release isLatest to false |
|
| ||
| preceding-sibling/releaseOrder + 1 | commonTypes::Properties |
|
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="8f8f072c6ff26126-d63968f2-42a54a5e-90269fd8-b832416a068607230d9e2745"><ac:plain-text-body><![CDATA[ | RIM_vocabulary_domain | vocDomain | codingscheme["VocabularyDomain"].concept.conceptCode | Vocabulary Domains are carried in a code system of vocabulary domains. |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="696bec652892d3e7-d3a1c1f0-41dd4e6d-8f35886d-9c3edf0c7db854a3f1b23b33"><ac:plain-text-body><![CDATA[ |
|
| codingscheme["VocabularyDomain"].concept.presentation["textualPresentation"].text | preferredPresentation |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="84f0e10e7cf962c1-8f7a61fa-4578483f-93a3bfb1-7744219e91c1a6d1b68942bf"><ac:plain-text-body><![CDATA[ |
| description | codingscheme["VocabularyDomain"].concept.definition.text | preferredDefinition for code |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e5417f18148aba60-59783696-41c74169-a0e4bb84-1760413cdebc54cfdbfb4a2e"><ac:plain-text-body><![CDATA[ |
| restrictsDomain | codingscheme["VocabularyDomain"].association["hasSubtype"].sourceConcept | Should this be hasSubtype or something else? |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="bd06336ca89c3dc0-330248f7-416b41f5-b629beb9-5fcc497e458c8a23d7d8d2d9"><ac:plain-text-body><![CDATA[ |
|
| codingscheme["VocabularyDomain"].association["hasSubtype"].targetconcept = vocDomain |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="89c666139eda5320-05d8beee-4c3844a3-ad308bdb-944efe77ba27f482d2b73332"><ac:plain-text-body><![CDATA[ | VOC_code_reference | usedToBuildValueSet | with(valueDomain[registeredName=current()/.]) |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> |
| referencesConceptCode | ...valueDomainEntry/conceptCode | 1) id is synthesized |
|
| ||
| referencesInternalId |
| Internal id's aren't exposed in lexGrid |
|
| ||
| relationship | ...valueDomainEntry/includeChildren = (relationship == 'hasSubtype') | Won't deal w/ non-hasSubtype relationships, but HL7 doesn't have any. |
|
| ||
| includeReferencedCode | ...valueDomainEntry/isSelectable |
| Not in current implementation |
| ||
| leafOnly |
| Not used in HL7 Model |
|
| ||
| directChildrenOnly |
| Not used in HL7 Model |
|
| ||
| isHeadCode |
| Only used when referenced in VOC_value_set_constructor. |
|
| ||
| referencesCodeSystem | .../valueDomainEntry.codingScheme | Shortcut in HL7 model. Must = VOC_value_set.basedOnCodeSystem |
|
| ||
| arbitraryUniqueValue() | .../valueDomainEntry.id |
|
|
| ||
VOC_registered_code_system | codeSystemId |
| VOC_registered_code_system isn't currently transferred to Lexgrid |
|
| ||
| sponsor |
|
|
|
| ||
| publisher |
|
|
|
| ||
| versionReportingMethod |
|
|
|
| ||
| licensingInformation |
| This field should really be transfer to copyright? |
|
| ||
| inUMLS |
|
|
|
| ||
| systemSpecificLocatorInfo |
|
|
|
| ||
| uri |
|
|
|
| ||
| isExternal |
|
|
|
| ||
VOC_value_set | valueSetId | valueDomain.registeredName |
|
|
| ||
| valueSetName | valueDomain.valueDomain | Name is the key in LexGrid, and is optional in HL7 - will need to be addressed. |
|
| ||
| basedOnCodeSystem | valueDomain.defaultCodingScheme | Optional in HL7, required in LexGrid. |
|
| ||
| description | valueDomain.entityDescription |
|
|
| ||
| definingExpression |
| Not used. |
|
| ||
| allCodes |
|
|
|
| ||
| isTaxonomicSet |
| No mapping available |
|
| ||
| valueSetAuthority |
| Included in valueSetID |
|
| ||
| valueSetNumber |
|
|
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="fc525b59cb916765-fd2f62f9-44714da5-96db9689-efc487661b1ca6aa729ce135"><ac:plain-text-body><![CDATA[ | VOC_value_set_constructor | usedToBuildValueSet | new valueDomainEntry(parent = valueDomain[valueSetId=current()/.],id=unique()) |
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| includesOrExcludesSet | valueDomainEntry.includesValueDomain |
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| includeHeadCode | valueDomainEntry.isSelectable |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="88bc6d36aa6452e5-c32318a8-487c485b-b0e981d0-e81b868f5f2f223314be1db6"><ac:plain-text-body><![CDATA[ |
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| valueDomainEntry.conceptCode = VOC_code_reference[usedToBuildValueSet=current().usedToBuildValueSet and isHeadCode=true].referencesConceptCode | Assumes that there always is a head code. |
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VOC_vocabulary_domain_value_set | representsVocDomain | (selector) |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="85a6ae6305e041c4-c3ce1f33-48a94902-a27485fb-69d50db3ad4c12945bd4ce28"><ac:plain-text-body><![CDATA[ |
| definedByValueSet | codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].text | have to get 'representsVocDomain' into supportedProperty header |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="dbda220590300d36-f706c33e-482c4598-97438e9f-7466a3d18c1c2b02b9f14e2a"><ac:plain-text-body><![CDATA[ |
| appliesInContext | codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].usageContext | Have to get all the contexts in the VocabularyDomain supportedContext header |
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VCS_release_version | releaseId | codingSchemeVersion.version | Note: this is not the way that things are done at the moment. At the moment, VCS_release_versions are loaded into systemRelease. Entered if one or more concept/relationship change. |
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| valueDomainVersion.version | Set iff one or more value sets change |
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| literal("false") | codingSchemeVersion.isComplete | All versions are delta's in this model |
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| releaseAgency |
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| releaseDate | codingSchemeVersion.versionDate |
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| valueDomainVersion.versionDate |
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| description | codingSchemeVersion.entityDescription |
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| valueDomainVersion.entityDescription |
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| editorID |
| There is no place for these currently. |
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| forWhomID |
| There is no place for these currently. |
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| concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) |
| This corresponds to the containing system release when the sytem release occurs. It is empty until then. |
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LexGrid Text Mapping
Source Definition |
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| LexGrid Text Mapping
| Source Definition | Comments | ||||
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| Column | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 |
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Line | 1 |
| <codingSchemeName> | <codingSchemeId> | <defaultLanguage> | <formalName> | version |
| description | copyright | This must be the first line. It contains the coding scheme metadata. | ||||
| 2 |
| <name> | description | Beginning of concepts in coding scheme. | ||||||||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d4987740-8f94-43d4-a38a-c2018cfc5fba"><ac:plain-text-body><![CDATA[ |
| 2 | [<code>] | <name> | description |
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| Beginning of concepts in coding scheme. | ]]></ac:plain-text-body></ac:structured-macro> | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0e81d127-fd05-444d-a0c9-3cdcf263c5db"><ac:plain-text-body><![CDATA[ |
| 3 | 3 | noformat | [<code>] | <name> | description |
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| Represent hierarchical 'hasSubtype' relationship nesting (name hasSubtype name) | ]]></ac:plain-text-body></ac:structured-macro> |
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| Text Element | LexGrid | Comments | ||||||||||
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| Coding Scheme |
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| codingSchemeName | codingScheme.codingSchemeName |
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| codingSchemeId | codingScheme.codingSchemeId |
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| defaultLanguage | codingScheme.defaultLanguage |
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| formalName | codingScheme.formalName |
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| version | codingScheme.representsVersion | Optional | ||||||||||
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| source | codingScheme.source | Optional | ||||||||||
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| description | codingScheme.entityDescription | Optional | ||||||||||
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| copyright | codingScheme.copyright | Optional | ||||||||||
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| Concepts |
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| code | concept.conceptCode | Optional | ||||||||||
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| name | concept.conceptName |
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| description | concept.entityDescription |
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