Page History
...
OBO Class | OBO Entity | LexGrid Model Element | Notes | ||
---|---|---|---|---|---|
Document Header | format-version |
| Not mapped. | ||
Document Header | data-version | CodingScheme.representsVersion | Creates a codingSchemeVersion and SystemRelease record. If not specified, then hard coded "UNASSIGNED" | ||
Document Header | version | CodingScheme.representsVersion | Deprecated - use data-version if present. | ||
Document Header | date |
| Not mapped. | ||
Document Header | saved-by |
| Ignored but included if contained in the remark entity. | ||
Document Header | auto-generated-by |
| Ignored but included if contained in the remark entity. | ||
Document Header | subsetdef |
| Not mapped. | ||
Document Header | import |
| Deprecated - Imports are used to assemble a larger document from smaller. | ||
Document Header | typeref |
| Deprecated. | ||
Document Header | synonymtypedef |
| Not mapped. | ||
Document Header | idspace |
| Not mapped.The idspace is a triple - localName, URN and description. | ||
Document Header | default-relationship-id-prefix |
| Not mapped. | ||
Document Header | id-mapping | CodingScheme.supportedAssociation | This is more generalized than the LexGrid model, as it supports mapping between *any* id's. Note that its primary purpose, however, is to handle supportedAssociation. | ||
Document Header | remark | CodingScheme.entityDescription | Will combine multiple remark entities into the entityDescription. | ||
Document Header | default-namespace | codingScheme.codingScheme | Will use default-namespace if provided; otherwise will use filename without the extension. | ||
Document Header | default-namespace | codingScheme.formalName | Will use default-namespace if provided; otherwise will use filename without the extension. | ||
Document Header | default-namespace | codingScheme.registeredName | Combination of "urn:lsid:bioontology.org:" and if provided, the value in "default-namespace"; but if not will use filename without the extension. | ||
|
| codingScheme.defaultLanguage | Hardcoded "en" | ||
|
| codingScheme.isNative | Hardcoded "true" | ||
Stanza | id | CodedEntry.conceptCode |
| ||
Stanza | name | CodedEntry.entityDescription |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1a1072476b02d7e5-a997b840-4e0b4614-abaa908b-7ba22f2417ea8d192bac8fe5"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.presentation['textualPresentation'].text |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d9e56f0407fcac99-85185e99-4ced4368-93dda859-5cb1372ad3e83bd8e719777a"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.presentation['textualPresentation'].isPreferred = true |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | alt_id | CodedEntry.property.property="alt_id" |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="aeafffad8958b5bb-99690763-4fa144fc-a0a8a49d-e208c851248ece1be0e2822d"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.property['alt_id'].propertyId |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="6edb4f7940aa6a20-7cad1570-4d0c4e47-9b898e38-d7670097acbb9e42d28002a9"><ac:plain-text-body><![CDATA[ |
|
| CodedEntry.property['alt_id'].text |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | is_anonymous | CodedEntry.isAnonymous = true |
| ||
Stanza | is_obsolete | CodedEntry.isActive = false |
| ||
Stanza | def | CodedEntry.definition |
| ||
|
| CodedEntry.definition.isPreferred = true |
| ||
Stanza | def.dbxref |
| See dbxref | ||
Stanza | comment | CodedEntry.comment.text |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1d3d047cdb70089c-0bc6dc6b-4c1c426b-92158868-81f8f3eb74bd496d5c2ec564"><ac:plain-text-body><![CDATA[ | Stanza | subset | property[subset tag] | See subsetdef | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="bfbd8338ebd4df65-0ba7fbbf-4593450f-aa1ea333-68dc02215af95586962dfa78"><ac:plain-text-body><![CDATA[ | Stanza | syonym | presentation['textualPresentation'].text |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f912a8ff91507e31-b96883e5-49ba4204-94fb8aa2-1f98388d140fd36ff1b00d90"><ac:plain-text-body><![CDATA[ | Stanza | synonym.scope | presentation['textualPresentation'].degreeOfFidelity |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5014fb5b2b0a58b8-837018b9-4f8a4f21-a9279647-4b20c8979ed9a8296b988a4b"><ac:plain-text-body><![CDATA[ | Stanza | synonym.type | presentation['textualPresentation'].representationalForm |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | synonym.dbxref | (see dbxref) |
| ||
Stanza | exact_synonym |
| See synonym | ||
Stanza | narrow_synonym |
| See synonym | ||
Stanza | broad_synonym |
| See synonym | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d891194a0f867ec3-b06c0f8f-465d414e-89a596db-93926c36b1ab6f56d057c1c8"><ac:plain-text-body><![CDATA[ | Stanza | xref | associations.['mapsTo'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | xref_analog |
| See synonym | ||
Stanza | xref_unk |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="b23b0df02fd124c8-1ec8dae3-46f34878-a6d6a0b4-27791ff4bf251576025bc4c6"><ac:plain-text-body><![CDATA[ | Stanza | is_a | associations.['hasSubtype'] | Reverse of the source and target. | ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | is_a.namespace |
| If present, the supplied namespace becomes the owning "codingScheme". | ||
Stanza | is_a.derived | associations.hasSubtype.associationQualifier | If present, need to include derived in the supportedAssociationQualifiers section | ||
Stanza | intersection_of |
| Processed the same way that OWL intersection operator is processed. This includes creation of anonymous sets. | ||
Stanza | union_of |
| Same as OWL | ||
Stanza | disjoint_from |
| Same as OWL | ||
Stanza | relationship | associations. |
| ||
Stanza | relationship.not_necessary | associations..associationQualifier |
| ||
Stanza | relationship.inverse_necessary | associations..associationQualifier |
| ||
Stanza | relationship.namespace |
| If present, the supplied namespace becomes the owning "codingScheme". | ||
Stanza | relationship.derived | associations..associationQualifier |
| ||
Stanza | relationship.cardinality | associations..associationQualifier |
| ||
Stanza | relationship.maxCardinality | associations..associationQualifier |
| ||
Stanza | relationship.minCardinality | associations..associationQualifier |
| ||
Stanza | is_obsolete | codedEntry.isActive = false |
| ||
|
| codedEntry.conceptStatus="is_obsolete" |
| ||
Stanza | replaced_by |
|
| ||
Stanza | consider |
| Not Mapped | ||
Stanza | use_term |
| (deprecated) | ||
dbxref | dbxref name | CodedEntry..source |
| ||
|
| supportedSource | dbxref name format is inconsistent. In most cases, it can be the localName of supportedSource, but special processing may be necessary in the case of URL's, etc | ||
dbxref | dbxref description |
| Not mapped. | ||
dbxref | trailing modifiers |
| Not mapped. | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5af2f7102e045e87-916a8cdb-495441bd-8a3f958d-2ce205abc7024f762462c0f0"><ac:plain-text-body><![CDATA[ | typeDef Stanza | domain | associations.['has_domain'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="6506f112b84a7714-06b90a3c-45e54812-94fca42d-0b98030c840e411ddd9a3b98"><ac:plain-text-body><![CDATA[ | typeDef Stanza | range | associations.['has_range'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="df62033b6c6d554f-7b321e34-41584083-a521a31c-2fcae0814c1f457e3e7ca9e5"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_cyclic | property['is_cyclic'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="8eff5366e533d1aa-71ef64e3-4fb04ebb-aa5a83ce-6bc6d67745c1ed8286641cbc"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_reflexive | property['is_reflexive'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
|
| association.isReflexive |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="47c493d02f217f33-40fd76d4-4f8743cc-8f8193ac-7181baa87b0701b00abd0d86"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_symmetric | property['is_symmetric'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
|
| association.isSymmetric |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f63d9ff636ef434a-62fa1b6d-4ef84e95-a00fb69b-c23f5f83fb02b394bb5d5674"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_transitive | property['is_transitive'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
|
| association.isTransitive |
| ||
typeDef Stanza | inverse_of | association.inverse |
| ||
instance stanza | id | same rules as general stanza | same rules as general stanza | ||
instance stanza | name | same rules as general stanza | same rules as general stanza | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="cd9cd96e3971ba6e-7f6524a2-453e4705-8f31a723-93c99352c47d79cfc5ff41ad"><ac:plain-text-body><![CDATA[ | instance stanza | instance_of | association['has_instance'] |
| ]]></ac:plain-text-body></ac:structured-macro> |
instance stanza |
| CodedEntry.property.property="" | data type properties go in Coded Entry property section |
...
HL7 Table | HL7 Column | LexGrid Model Element | Notes |
|
| |||||
---|---|---|---|---|---|---|---|---|---|---|
|
|
|
| Intentionally Not mapped | Outstanding issues | |||||
Model | <modelID> | <codingSchemeName> |
| |||||||
| <name> | <formalName> |
| |||||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5b18be9fc5bb5523-59f97376-49174d7d-adf2af5a-d5f2154ad1f238685cdf9818"><ac:plain-text-body><![CDATA[ |
|
| <registeredName> | [http://www.hl7.org/Library/data-model/RIM | http://www.hl7.org/Library/data-model/RIM] *[1] | ]]></ac:plain-text-body></ac:structured-macro> | ||||
|
| <defaultLanguage> | en* | |||||||
| <versionNumber> | <representsVersion> |
| |||||||
|
| <isNative> | 0* | |||||||
|
| <approximateNumberofConcepts> | Result of count on concept bearing table? | |||||||
|
| <firstRelease> | MISSING |
|
| |||||
|
| <modifiedRelease> | MISSING |
|
| |||||
|
| <deprecated> | MISSING |
|
| |||||
| <description> | <entityDescription> |
|
|
| |||||
|
| <copyright> | MISSING |
|
| |||||
VCS_code_system | codeSystemId | codingScheme.registeredName | Moved to metadata file. |
|
| |||||
| codeSystemType | commonTypes::Properties | This is an HL7 specific code system property to distinguish internal vs external code systems. Moved to metadata file. |
|
| |||||
| codeSystemName | concept.conceptCode | Moved to metadata file. |
|
| |||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="001fa773dc104216-446e9a55-4675419c-acb796d4-25d6a940a054bb1678e65a8c"><ac:plain-text-body><![CDATA[ |
| codeSystemName | concept.presentation['textualPresentation'].text |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
| fullName | codingScheme.formalName |
|
|
| |||||
| description | codingScheme.entityDescription | Moved to metadata file. |
|
| |||||
| releaseId | codingScheme.representsVersion | Moved to metadata file. |
|
| |||||
| copyrightNotice | codingScheme.copyright | Moved to metadata file. |
|
| |||||
| literal('en') | codingScheme.defaultLanguage | Moved to metadata file. |
|
| |||||
VCS_concept_code_xref | internalId |
|
|
|
| |||||
| Concept Code | concept.conceptCode |
| RIM db column conceptCode2 |
| |||||
| Case Difference | commonTypes::Properties | Basically a proprty to outline whether there are case differences in the Concept Code or not (mainly used, but not restricted tor units of measure) | RIM db column codeInstance |
| |||||
| Status | concept.isActive=(conceptStatus=='A'?) |
| RIM db column conceptStatus |
| |||||
|
| concept.conceptStatus | Not used by HL7. A = isActive, R = retired |
|
| |||||
VCS_concept_designation | internalId | foreign key |
|
| ||||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="4ae9c90c42c2f98e-e2727a9f-4ff04cf9-a6ff80ba-8f6c4f762c113bc17438fce4"><ac:plain-text-body><![CDATA[ |
| designation | concept.presentation['textualPresentation'].text |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
| designationSeq |
|
|
| ||||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a66bb28a788494b3-04bc7d3d-4ecd473d-b30ba122-0e0e0acec726dd1a5612e379"><ac:plain-text-body><![CDATA[ |
| language | concept.presentation['textualPresentation'].language | Can be omitted if language = default language |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="8a0eaac3fc4aa7f1-17f9085d-443b477d-be8fb028-d6f8244515d5602645f944c7"><ac:plain-text-body><![CDATA[ |
| preferredForLanguage | concept.presentation['textualPresentation'].isPreferred |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="11b3e8634dc52edc-82d529bf-4bb94bdd-ac55a536-6be4c5fcf03c33dd57ca98d4"><ac:plain-text-body><![CDATA[ | VCS_concept_description | internalId | with(codeSystem[deref(internalId)].concept[deref(internalId)]).definition | foreign key |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="8a1fdb06dbadc1f5-07e68094-4d074402-82879705-db1acecae7590d8f9f364d75"><ac:plain-text-body><![CDATA[ |
| description | concept.presentation['textualPresentation'].text |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="4f11754d748871f9-612c01c8-40f543a2-a5d3860f-194dd16470a556888a0ca44f"><ac:plain-text-body><![CDATA[ |
| language | concept.presentation['textualPresentation'].language |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="2759926aeea482e6-0161ec52-4452491f-b55a8af2-0dae87088b0fa5a539abefe6"><ac:plain-text-body><![CDATA[ |
| literal('true') | concept.presentation['textualPresentation'].isPreferred |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="779fb8c223c0ddf7-27c0e334-4d8049bf-9cabbdb2-2c973c97c94b69de3b50c9cb"><ac:plain-text-body><![CDATA[ |
| uniqueId() | concept.presentation['textualPresentation'].propertyId |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="9a0e20b1344eaaa8-0a3fd044-4f274961-b166ae97-9e6889b7ec9e2e0b237a776d"><ac:plain-text-body><![CDATA[ |
| literal('definition') | concept.presentation['textualPresentation'].property |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
VCS_concept_property | internalId | foreign key |
|
| ||||||
| propertyCode | concept.property.property |
|
|
| |||||
| propertySeq | Currently not used by HL7 |
|
| ||||||
| propartyValue | concept.property.text |
|
|
| |||||
| language | concept.property.language |
|
|
| |||||
VCS_concept_relationship | relationCode | association.association |
|
|
| |||||
| sourceInternalId | associationInstance.sourceConcept |
|
|
| |||||
| targetInternalId | associationTarget.targetConcept |
|
|
| |||||
Model | modelID | systemRelease.releaseId |
|
|
| |||||
| name | service.service |
|
|
| |||||
| versionNumber | service.version |
|
|
| |||||
| lastModifiedDate | systemRelease.releaseDate |
|
|
| |||||
| developingOrganization | systemRelease.releaseAgency |
|
|
| |||||
| committeeID |
|
|
| ||||||
| description | systemRelease.entityDescription |
|
|
| |||||
| concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) | systemRelease.releaseURN |
|
|
| |||||
| literal('true') | systemRelease.isLatest | Also have to set the prior release isLatest to false |
|
| |||||
| preceding-sibling/releaseOrder + 1 | systemRelease.releaseOrder |
|
|
| |||||
Model | modelID | commonTypes::Properties |
|
|
| |||||
(Special mapping for NCI) | name | codingScheme.localName |
|
|
| |||||
| versionNumber | codingScheme.representsVersion |
|
|
| |||||
| lastModifiedDate | commonTypes::Properties |
|
|
| |||||
| developingOrganization | commonTypes::Properties |
|
|
| |||||
| committeeID |
|
|
| ||||||
| description | codingScheme.entityDescription |
|
|
| |||||
| concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) | codingScheme.registeredName |
|
|
| |||||
| literal('true') | commonTypes::Properties | Also have to set the prior release isLatest to false |
|
| |||||
| preceding-sibling/releaseOrder + 1 | commonTypes::Properties |
|
|
| |||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e54bc9d4481ec710-8001571d-4de44a5f-ade1863e-71dc8c5b37f5030ca1a08f6e"><ac:plain-text-body><![CDATA[ | RIM_vocabulary_domain | vocDomain | codingscheme["VocabularyDomain"].concept.conceptCode | Vocabulary Domains are carried in a code system of vocabulary domains. |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="095c35b8f1012d4e-9ccccf7c-4dda4e5b-881fa671-01e6ea4dea16950bbb6df9c8"><ac:plain-text-body><![CDATA[ |
|
| codingscheme["VocabularyDomain"].concept.presentation["textualPresentation"].text | preferredPresentation |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d16cd9f7b0b1552f-03273c0d-42f64b11-a992a896-c2a058069ec71cd58dbeaa08"><ac:plain-text-body><![CDATA[ |
| description | codingscheme["VocabularyDomain"].concept.definition.text | preferredDefinition for code |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1b2dfdea6dacb1b9-94ed5bfd-42a6460d-aa16aee3-146896294be7528bf901ea50"><ac:plain-text-body><![CDATA[ |
| restrictsDomain | codingscheme["VocabularyDomain"].association["hasSubtype"].sourceConcept | Should this be hasSubtype or something else? |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="2a0ad98090fd981c-addb0256-41ee4f2a-8d52807a-6f6f6470d593866b33ccc90f"><ac:plain-text-body><![CDATA[ |
|
| codingscheme["VocabularyDomain"].association["hasSubtype"].targetconcept = vocDomain |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="35bb94b03398fa1a-20474210-42ef463b-8df5aa8f-9b8eb7581d301d31bfa747be"><ac:plain-text-body><![CDATA[ | VOC_code_reference | usedToBuildValueSet | with(valueDomain[registeredName=current()/.]) |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
| referencesConceptCode | ...valueDomainEntry/conceptCode | 1) id is synthesized |
|
| |||||
| referencesInternalId | Internal id's aren't exposed in lexGrid |
|
| ||||||
| relationship | ...valueDomainEntry/includeChildren = (relationship == 'hasSubtype') | Won't deal w/ non-hasSubtype relationships, but HL7 doesn't have any. |
|
| |||||
| includeReferencedCode | ...valueDomainEntry/isSelectable |
| Not in current implementation |
| |||||
| leafOnly | Not used in HL7 Model |
|
| ||||||
| directChildrenOnly | Not used in HL7 Model |
|
| ||||||
| isHeadCode |
| Only used when referenced in VOC_value_set_constructor. |
|
| |||||
| referencesCodeSystem | .../valueDomainEntry.codingScheme | Shortcut in HL7 model. Must = VOC_value_set.basedOnCodeSystem |
|
| |||||
| arbitraryUniqueValue() | .../valueDomainEntry.id |
|
|
| |||||
VOC_registered_code_system | codeSystemId | VOC_registered_code_system isn't currently transferred to Lexgrid |
|
| ||||||
| sponsor |
|
|
| ||||||
| publisher |
|
|
| ||||||
| versionReportingMethod |
|
|
| ||||||
| licensingInformation | This field should really be transfer to copyright? |
|
| ||||||
| inUMLS |
|
|
| ||||||
| systemSpecificLocatorInfo |
|
|
| ||||||
| uri |
|
|
| ||||||
| isExternal |
|
|
| ||||||
VOC_value_set | valueSetId | valueDomain.registeredName |
|
|
| |||||
| valueSetName | valueDomain.valueDomain | Name is the key in LexGrid, and is optional in HL7 - will need to be addressed. |
|
| |||||
| basedOnCodeSystem | valueDomain.defaultCodingScheme | Optional in HL7, required in LexGrid. |
|
| |||||
| description | valueDomain.entityDescription |
|
|
| |||||
| definingExpression | Not used. |
|
| ||||||
| allCodes | if 'true': valueDomain.conceptCode = "@", valueDomain.includeChildren='true' |
|
|
| |||||
| isTaxonomicSet | No mapping available |
|
| ||||||
| valueSetAuthority | Included in valueSetID |
|
| ||||||
| valueSetNumber |
|
|
| ||||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="2f31d663cf64fe31-c69c198d-45c64e0c-904d9623-cb7b4c66b30925ece4280a18"><ac:plain-text-body><![CDATA[ | VOC_value_set_constructor | usedToBuildValueSet | new valueDomainEntry(parent = valueDomain[valueSetId=current()/.],id=unique()) |
|
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
| includesOrExcludesSet | valueDomainEntry.includesValueDomain |
|
|
| |||||
| includeHeadCode | valueDomainEntry.isSelectable |
|
|
| |||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="7bd21a383e27e065-1319c6b1-47cc4dac-bc9c9080-2c67399d6230e76917a5a1c9"><ac:plain-text-body><![CDATA[ |
|
| valueDomainEntry.conceptCode = VOC_code_reference[usedToBuildValueSet=current().usedToBuildValueSet and isHeadCode=true].referencesConceptCode | Assumes that there always is a head code. |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
VOC_vocabulary_domain_value_set | representsVocDomain | (selector) |
|
|
| |||||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="357f8c071c4180c5-94426565-495748c5-91b48255-625095b49359f9998a8e2d80"><ac:plain-text-body><![CDATA[ |
| definedByValueSet | codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].text | have to get 'representsVocDomain' into supportedProperty header |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f8798f3f289675e4-dfe7c81f-44e547d2-b2999981-bdfe03418f8a92be4817f55d"><ac:plain-text-body><![CDATA[ |
| appliesInContext | codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].usageContext | Have to get all the contexts in the VocabularyDomain supportedContext header |
|
| ]]></ac:plain-text-body></ac:structured-macro> | |||
VCS_release_version | releaseId | codingSchemeVersion.version |
This is not the way that things are done at the moment. At the moment, VCS_release_versions are loaded into systemRelease. Entered if one or more concept/relationship change. |
|
| |||||
|
| valueDomainVersion.version | Set iff one or more value sets change |
|
| |||||
| literal("false") | codingSchemeVersion.isComplete | All versions are delta's in this model |
|
| |||||
| releaseAgency |
|
|
| ||||||
| releaseDate | codingSchemeVersion.versionDate |
|
|
| |||||
|
| valueDomainVersion.versionDate |
|
|
| |||||
| description | codingSchemeVersion.entityDescription |
|
|
| |||||
|
| valueDomainVersion.entityDescription |
|
|
| |||||
| editorID | There is no place for these currently. |
|
| ||||||
| forWhomID |
|
| |||||||
| concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) |
| This corresponds to the containing system release when the sytem release occurs. It is empty until then. |
|
|
...
|
|
| Source Definition |
|
|
|
|
|
|
| Comments | ||
|
| Column | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 |
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="36a84eda63374ec2-ec1f3760-47eb4c3e-bb21b05f-13c9e60669bcd4b2dd14913a"><ac:plain-text-body><![CDATA[ | Line | 1 |
| <codingSchemeName> | <codingSchemeId> | <defaultLanguage> | <formalName> | [<version>] | [<source>] | [<description>] | [<copyright>] | This must be the first line. It contains the coding scheme metadata. | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5f76fb7934fdaede-48483675-4abb4988-92c69196-79c5ef6df78935ad983d962d"><ac:plain-text-body><![CDATA[ | 2 |
| [<code>] | <name> | [<description>] |
|
|
|
|
| Beginning of concepts in coding scheme. | ]]></ac:plain-text-body></ac:structured-macro> | |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="4422821c9b9dc6be-282ea80e-40274998-b95d941e-754a7fd1c2caf1ca2d9a9e0c"><ac:plain-text-body><![CDATA[ | 3 |
|
| [<code>] | <name> | [<description>] |
|
|
|
| Represent hierarchical 'hasSubtype' relationship nesting (name hasSubtype name) | ]]></ac:plain-text-body></ac:structured-macro> |
Text Element | LexGrid | Comments |
---|---|---|
Coding Scheme |
|
|
codingSchemeName | codingScheme.codingSchemeName |
|
codingSchemeId | codingScheme.codingSchemeId |
|
defaultLanguage | codingScheme.defaultLanguage |
|
formalName | codingScheme.formalName |
|
version | codingScheme.representsVersion | Optional |
source | codingScheme.source | Optional |
description | codingScheme.entityDescription | Optional |
copyright | codingScheme.copyright | Optional |
Concepts |
|
|
code | concept.conceptCode | Optional |
name | concept.conceptName |
|
description | concept.entityDescription |
|
...