Page History

model element

value column name

go-term

x

  NA  

NA

NA  
 

None

propertyValue

None  

go-id

NA  
 

NA

NA  

x

propertyQualifierId

val1

PropertyQualifier attribute content?

go-source

NA  
 

NA

NA  

x

propertyQualifierId

val1

PropertyQualifier attribute content?

source-date

NA  
 

NA

NA  

x

propertyQualifierId

val1

PropertyQualifier attribute content?

term-name

x

NA  
 

NA

NA  
 

None

propertyValue

None  

term-group

NA  
 

NA

x

NA  
 

None

representationalForm

property attribute

term-source

NA  

x

NA  
 

NA

None  

attributeValue

source

def-source

NA  

x

NA  
 

NA

None  

attributeValue

source

def-definition

x

NA  
 

NA

NA  

propertyValue

definition

None

Definition_Review_Date

NA  
 

NA

NA  

x

propertyQualifierId

val1

PropertyQualifier attribute content?

Definition_Reviewer_Name

NA  
 

NA

NA  

x

propertyQualifierId

val1

PropertyQualifier attribute content?

None

None

None

NA

codingScheme.representsVersion

No comments

None

None

None

NA

codingScheme.codingScheme

Hard coded in java file as "UMLS_SemNet"

None

None

None

NA

codingScheme.formalName

Hard coded in java file as "UMLS Semantic Network"

None

None

None

NA

codingScheme.defaultLanguage

Hard coded in java file as "en"

None

None

None

NA

codingScheme.approxNumConcepts

Hard coded in java file as

None

None

None

NA

codingScheme.entityDescription

hard coded in java file as "The UMLS Semantic Network is one of three UMLS Knowledge Sources developed as part of the Unified Medical Language System project. The network provides a consistent Hategorization of all concepts represented in the UMLS Metathesaurus."

license.txt

None

None

NA

codingScheme.copyright

Read from license.txt file or hard coded reference in java file

license.txt

None

None

NA

codingScheme.registeredName

Hard coded in java file as "urn:lsid:nlm.nih.gov:semnet"

license.txt

None

None

NA

codingScheme.concepts.dc

Hard coded in java file as "concepts"

license.txt

None

None

NA

codingScheme.relations.dc

Hard coded in java file as "relations"

license.txt

None

None

NA

codingScheme.mappings.dc

Hard coded in java file as "mappings"

license.txt

None

None

NA

codingScheme.localNameList

No comments

license.txt

None

None

NA

codingScheme.localNameList.

Hard coded in java file as "UMLS_SemNet"

license.txt

None

None

NA

codingScheme.localNameList

No comments 

license.txt

None

None

NA

codingScheme.localNameList.

No comments

license.txt

None

None

NA

codingScheme.source

No comments

license.txt

None

None

NA

codingScheme.source.content

No comments

license.txt

None

None

NA

codingScheme.localNameList

No comments

license.txt

None

None

NA

codingScheme.localNameList.

No comments

license.txt

None

None

NA

codingScheme.localNameList

No comments

license.txt

None

None

NA

codingScheme.localNameList.

No comments

license.txt

None

None

NA

codingScheme.localNameList

No comments

license.txt

None

None

NA

codingScheme.localNameList.

No comments

license.txt

None

None

NA

codingScheme.localNameList

No comments

license.txt

None

None

NA

codingScheme.localNameList.

No comments

license.txt

None

None

NA

mappings.supportedFormat

No comments

license.txt

None

None

NA

mappings.supportedFormat.localId

Hard coded in java file as "text/plain"

license.txt

None

None

NA

mappings.supportedFormat.urn

Hard coded in java file as "urn:oid:2.16.840.1.113883.6.10:text_plain"

license.txt

None

None

NA

mappings.supportedAssociation

No comments

SRDEF

RL

None

NA

mappings.supportedAssociation.localId

No comments

SRDEF

RL

None

NA

mappings.supportedContext

No comments

SRDEF

RL

None

NA

mappings.supportedSource

No comments

SRDEF

RL

None

NA

mappings.supportedSource.localId

Hard coded in java file as "NLM"

SRDEF

RL

None

NA

mappings.supportedSource.urn

Hard coded in java file as "urn:lsid:nlm.nih.gov"

SRDEF

RL

None

NA

mappings.supportedHierarchy

No comments

SRDEF

RL

None

NA

mappings.supportedHierarchy.localId

Hard coded in java file as "is_a"

SRDEF

RL

None

NA

mappings.supportedHierarchy.isForwardNavigable

Hard coded as "true"

SRDEF

RL

None

NA

mappings.supportedHierarchy.rootCode

Hard coded as "@"

SRDEF

RL

None

NA

mappings.supportedHierarchy.associationList

Hard coded in java file as "hasSubtype"

SRDEF

RL

None

NA

mappings.supportedAssociationQualifier

No comments

SRFLD

COL

None

NA

mappings.supportedProperty

No comments

SRFLD

COL

None

NA

mappings.supportedProperty.localId

If SRDEF appears in the FIL column then this is treated a potential supported property and is entered in supported properties as such.

SRFLD

COL

None

NA

mappings.supportedProperty.urn

Hard coded in java file as ""

SRFLD

COL

None

NA

mappings.supportedLanguage

No comments

SRFLD

COL

None

NA

mappings.supportedLanguage.localId

Hard coded in java file as "en"

SRFLD

COL

None

NA

mappings.supportedLanguage.urn

Hard coded in java file as "urn:oid:2.16.840.1.113883.6.84:en"

SRFLD

COL

None

NA

mappings.supportedCodingScheme

No comments

SRFLD

COL

None

NA

mappings.supportedCodingScheme.localId

Hard coded in java file as "UMLS_SemNet"

SRFLD

COL

None

NA

mappings.supportedCodingScheme.urn

Hard coded in java file as "urn:lsid:nlm.nih.gov:semnet"

SRFLD

COL

None

NA

mappings.supportedRepresentationalForm

No comments

SRFLD

COL

None

NA

mappings.supportedConceptStatus

No comments

SRFLD

COL

None

NA

mappings.supportedPropertyLink

No comments

SRFLD

COL

None

NA

mappings.supportedPropertyQualifier

No comments

SRFLD

COL

None

NA

mappings.supportedDataType

No comments

SRDEF

UI

  None  

NA

concept.id(inherited from Entity)

No comments 

SRDEF

STY/RL

None 
 

NA

concept.enitityDescription(inheritance path Entity->versionableAndDescribable)

No comments

SRDEF 
 

STY/RL

None 
 

NA

concept.conceptProperty

No comments

SRDEF

NH

None 
 

NA

concept.conceptProperty.text.content

No comments

  SRDEF  

NH 

None 
 

NA

concept.conceptProperty.format

Hard coded in java file as "text/plain"

  SRDEF  

NH

None 
 

NA

concept.conceptProperty.propertyName

Hard coded in java file as "NH"

  SRDEF  

NH

None 
 

NA

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

  SRDEF  

NH

None 
 

NA

concept.presentation

No comments

  SRDEF  

NH

None 
 

NA

concept.presentation.propertyName (inherited from Property)

Hard coded in java file as "STY/RL" or "ABR"

  SRDEF  

NH

None 
 

NA

concept.presentation.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

SRDEF

STY/RL, ABR

None 
 

NA

concept.presentation.text.content

No comments

SRDEF

STY/RL, ABR

None

NA

concept.presentation.format

Hard coded in java file as "text/plain"

SRDEF

STY/RL, ABR

None

NA

concept.presentation.isPreferred

Hard coded in java file as true.

SRDEF

STY/RL, ABR

None

NA

concept.definition.propertyName (inherited from Property)

Hard coded in java file as "DEF"

SRDEF

STY/RL, ABR

None

NA

concept.definition.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

SRDEF

DEF

None 
 

NA

concept.definition.text.content

No comments

  SRDEF  

DEF

None 
 

NA

concept.definition.format

Hard coded in java file as "text/plain"

  SRDEF  

DEF

None 
 

NA

concept.definition.isPreferred

Hard coded in java file as true.

  SRDEF  

DEF

None 
 

NA

concept.comment

No comments

SRDEF

EX

None 
 

NA

concept.comment.propertyName (inherited from Property)

Hard coded in java file as "EX"

  SRDEF  

EX

None 
 

NA

concept.comment.text.content

No comments

  SRDEF  

EX

None 
 

NA

concept.comment.format

Hard coded in java file as "text/plain"

  SRDEF  

EX

None 
 

NA

concept.comment.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

  SRDEF  

EX

None 
 

NA

concept.instruction

No comments

  SRDEF  

EX

None 
 

NA

concept.instruction.propertyName (inherited from Property)

Hard coded in java file as "UN"

SRDEF

UN

None 
 

NA

concept.instruction.text.content

No comments

  SRDEF  

UN 

None 
 

NA

concept.instruction.format

Hard coded in java file as "text/plain"

  SRDEF  

UN

None 
 

NA

concept.instruction.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

SRSTR

RL

  None  

NA

association.id (inherited from Entity)

In the case of RL value is "isa" the id is hard coded to hasSubtype. The direction of the association is also reversed

  SRSTR  

RL

None 
 

NA

association.isTransitive

Hard coded to true if the value of RL is "isa"

SRSTR

RL

None 
 

NA

association.forwardName

Reversed when value of RL is "isa"

SRSTR

STY/RL

None 
 

NA

associationInstance.sourceId

Reversed when value of RL is "isa"

SRSTR

STY/RL

None 
 

NA

associationTarget.targetId

No comments

SRDEF

RIN

None 
 

NA

association.reverseName

No comments

SRDEF

DEF

None 
 

NA

association.entityDescription.content (inheritance path for entityDescription is Entity->versionableAndDescribable)

When SRDEF value RT is "RL"

SRSTRE1

UI/STY(first argument)

None 
 

NA

associationInstance.sourceId

Reversed when value of RL is "isa"

SRSTRE1

UI/STY(2nd argument)

None 
 

NA

associationTarget.targetId

Reversed when value of RL is "isa"

MRSAB.RRF

SVER

Release date or version number of a source

NA 

codingScheme.representsVersion

No comments

MRSAB.RRF

SSN

Source short name

NA 

codingScheme.codingScheme

No comments

MRSAB.RRF

SON

Source Official Name

NA 

codingScheme.formalName

No comments

MRSAB.RRF

LAT

Language of Term(s)

NA 

codingScheme.defaultLanguage

No comments

MRSAB.RRF

TRF

Term frequency for a source

NA 

codingScheme.approxNumConcepts

No comments

MRSAB.RRF

SCIT

Source citation

NA 

codingScheme.entityDescription

Inherits entityDescription from versionableAndDescribable

MRSAB.RRF

SCC

Content contact info for a source

NA 

codingScheme.copyright

No comments  

MRSAB.RRF

SCC

Content contact info for a source

NA 

codingScheme.registeredName

Pulled from iso mapping configuration file using method getISOString(RSAB from MRSAB.RRF)

MRDOC.RRF

EXPL

Detailed explanation

x

codingScheme.representsVersion

Where Dockey = "RELEASE" and value = "umls.release.name"

  MRDOC.RRF  

EXPL  

Detailed explanation

x

codingScheme.codingScheme

Hard coded in java file as "NCI MetaThesaurus"

  MRDOC.RRF  

EXPL  

Detailed explanation

x

codingScheme.formalName

Hard coded in java file as "NCI MetaThesaurus"

  MRDOC.RRF  

EXPL  

Detailed explanation

x

codingScheme.defaultLanguage

Hard coded in java file as "ENG"

MRCONSO.RRF

  None  

None

x

codingScheme.approxNumConcepts

Count of CODE value in MRCONSO.RRF

  MRCONSO.RRF  

None

None 

x

codingScheme.entityDescription

Hard coded in java file as "NCI MetaThesaurus loaded from RRF files."

  MRCONSO.RRF  

None

None 

x

codingScheme.copyright

Hard coded in java file as "Some material in the NCI Metathesaurus is from copyrighted sources of the respective copyright claimants. All sources appearing in the NCI Metathesaurus are licensed or authorized for NCI use. Users of the NCI Metathesaurus are responsible for compliance with the terms of these licenses and with any copyright restrictions and are referred to NCI Center of Bioinformatics for license terms and to the copyright notices appearing in the original sources, all of which are obtainable online by reference at http://ncimeta.nci.nih.gov/."

  MRCONSO.RRF  

None

None 
 

NA

codingScheme.localNameList

Hard coded as constant in java file as "localName"

MRSAB.RRF

SON

Source Official Name

NA 

codingScheme.localNameList.

No comments  

MRSAB.RRF

  SON  

Source Official Name

  NA

codingScheme.localNameList

Hard coded as constant in java file as "localName"

  MRSAB.RRF  

SON  

Source Official Name

NA 

codingScheme.localNameList.

Pulled from iso mapping configuration file using method getISOString(RSAB from MRSAB.RRF)

  MRSAB.RRF  

SON  

Source Official Name

NA  

codingScheme.source

Hard coded as constant in java file as "source"

MRDOC.RRF

EXPL

Detailed explanation

NA 

codingScheme.source.content

String concatenation of "UMLS-" and value of EXPL

  MRDOC.RRF  

EXPL  

Detailed explanation

x

codingScheme.localNameList

Hard coded as constant in java file as "localName"

  MRDOC.RRF  

EXPL  

Detailed explanation

x

codingScheme.localNameList.

Hard coded in java file as "NCI Thesaurus"

  MRDOC.RRF  

EXPL  

Detailed explanation

x

codingScheme.localNameList

Hard coded as constant in java file as "localName"

  MRDOC.RRF  

EXPL  

Detailed explanation

x

codingScheme.localNameList.

Hard coded in java file as "NCI_Thesaurus"

  MRDOC.RRF  

EXPL  

Detailed explanation

x

codingScheme.localNameList

Hard coded as constant in java file as "localName"

  MRDOC.RRF  

EXPL  

Detailed explanation

x

codingScheme.localNameList.

Hard coded in java file as "10001"

  MRDOC.RRF  

EXPL  

Detailed explanation

x

codingScheme.localNameList

Hard coded as constant in java file as "source"

  MRDOC.RRF  

EXPL  

Detailed explanation

x

codingScheme.localNameList.

Hard coded in java file as "RRF Files"

  MRDOC.RRF  

EXPL  

Detailed explanation

NA 

mappings.supportedFormat

Hard coded as constant in java file as "Format"

  MRDOC.RRF  

EXPL  

Detailed explanation

NA 

mappings.supportedFormat.localId

Hard coded as one of several constants in a java file

  MRDOC.RRF  

EXPL  

Detailed explanation

NA 

mappings.supportedAssociation

Hard coded as constant in java file as "Association"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA 

mappings.supportedAssociation.localId

No comments

MRREL.RRF 

REL, RELA 

Relationship, Relationship attribute 

NA

mappings.supportedContext

Hard coded as constant in java file as "Context" May not be used in individual RRF load

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedSource

Hard coded as constant in java file as "Source" May not be used in individual RRF load

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedHierarchy

Hard coded as constant in java file as "Hierarchy"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedAssociationQualifier

Hard coded as constant in java file as "AssociationQualifier"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedProperty

Hard coded as constant in java file as "Property"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedLanguage

Hard coded as constant in java file as "Language"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedCodingScheme

Hard coded as constant in java file as "CodingScheme"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedRepresentationalForm

Hard coded as constant in java file as "RepresentationalForm"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedConceptStatus

Hard coded as constant in java file as "ConceptStatus"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedPropertyLink

Hard coded as constant in java file as "PropertyLink"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedPropertyQualifier

Hard coded as constant in java file as "PropertyQualifier"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedDataType

Hard coded as constant in java file as "DataType"

MRCONSO.RRF

CODE

Unique Identifier or code for string in source

NA 

concept.conceptCode

No comments

MRCONSO.RRF

CUI

Unique identifier for concept

x

concept.conceptCode

No comments
 

MRCONSO.RRF

CUI

Unique identifier for concept 

NA 

concept.isActive

Hard coded in parameter as true.

  MRCONSO.RRF

CUI

Unique identifier for concept

NA 

concept.conceptStatus

Hard coded as constant in java file as "Active"

  MRCONSO.RRF

CUI

Unique identifier for concept

NA 

concept.isAnonymous

Hard coded in parameter as false.

MRCONSO.RRF

STR

String

NA 

concept.entityDescription

Non comments
 

MRCONSO.RRF

STR   
 

String 

NA 

concept.conceptProperty.Format

Hard coded as constant in java file as "text/plain" or null

  MRCONSO.RRF  

STR

  String  

NA

concept.conceptProperty.propertyName

May be hard coded as constant in java file as one of several properties.

  MRCONSO.RRF  

STR

  String  

NA

concept.conceptProperty.usageContext

No comments
 

MRCONSO.RRF

  STR  

String

NA 

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

  MRCONSO.RRF  

STR

  String  

NA

concept.presentation.propertyId

Generated value for property textual presentation using "T" concatenated with a steadily incremented numerical value.

  MRCONSO.RRF  

STR

  String  

NA

concept.comment.propertyId

Generated value for property comment using "C" concatenated with a steadily incremented numerical value.

  MRCONSO.RRF  

STR

  String  

NA

concept.definition.propertyId

Generated value for property definition using "D" concatenated with a steadily incremented numerical value.

  MRCONSO.RRF  

STR

  String  

NA

concept.instruction.propertyId

Generated value for property instruction using "I" concatenated with a steadily incremented numerical value.

MRCONSO.RRF

CUI

Unique identifier for concept

NA 

concept.conceptProperty.text.content.

No comments
 

MRCONSO.RRF

CUI

Unique identifier for concept 

NA 

concept.conceptProperty.propertyId

Generated value for property using "CUI" concatenated with a steadily incremented numerical value.

  MRCONSO.RRF

CUI

Unique identifier for concept

NA 

concept.conceptProperty.propertyName

Hard coded as constant in java file as "UMLS_CUI"

  MRCONSO.RRF

CUI

Unique identifier for concept

NA 

concept.conceptProperty.propertyType

Hard coded as constant in java file as "property"

  MRCONSO.RRF

CUI

Unique identifier for concept

NA 

concept.conceptProperty.format

Left as null

MRSTY.RRF

STY

Semantic type

NA 

concept.conceptProperty.text.content

No comments
 

MRSTY.RRF

  STY  

Semantic type

  NA

concept.conceptProperty.propertyId

Generated value for property using "SemType" concatenated with a steadily incremented numerical value.

  MRSTY.RRF  

STY  

Semantic type

  NA

concept.conceptProperty.propertyName

Hard coded as constant in java file as "Semantic_Type"

  MRSTY.RRF  

STY  

Semantic type

  NA

concept.conceptProperty.propertyType

Hard coded as constant in java file as "property"

  MRSTY.RRF  

STY  

Semantic type

  NA

concept.conceptProperty.format

Hard coded as constant in java file as "text/plain"

MRCONSO.RRF

LAT

Language of Term(s)

  NA

concept.conceptProperty.language

Logic of code simply selects the first definition in the source as the preferred source

MRCONSO.RRF

TS

Term status

  NA

concept.presentation.isPreferred

One or a combination of these RRF values determines whether a presentation is preferred: LAT, TS, STT, ISPREF, RANK.

MRCONSO.RRF

STT

String type

  NA

concept.presentation.isPreferred

One or a combination of these RRF values determines whether a presentation is preferred: LAT, TS, STT, ISPREF, RANK.

MRCONSO.RRF

ISPREF

Indicates whether AUI is preferred

  NA

concept.presentation.isPreferred

One or a combination of these RRF values determines whether a presentation is preferred: LAT, TS, STT, ISPREF, RANK.

MRRANK.RRF

RANK

Termgroup ranking

  NA

concept.presentation.isPreferred

One or a combination of these RRF values determines whether a presentation is preferred: LAT, TS, STT, ISPREF, RANK.

  MRRANK.RRF  

RANK
 

Termgroup ranking

  NA

concept.presentation.isPreferred

No comments

MRDEF.RRF

DEF

Definition

NA  

concept.definition.text.content

No comments

NA

concept.definition.isPreferred

Logic of code simply selects the first definition in the source as the preferred source

MRSAT.RRF

ATN

Attribute name

  NA

concept.conceptProperty.propertyType

Translated to a LexGrid property type. For values AN, CX, HN this property is typed as a "COMMENT" in LexGrid. For value EV this property is typed "PRESENTATION" This only occurs when the STYPE points to the CODE, SCUI or SDUI columns in MRREL.RRF or MRCONSO.RRF. If the STYPE points to SAUI then the values are loaded as property qualifiers.

MRSAT.RRF

ATV

Attribute value

  NA

concept.conceptProperty.propertyValue

No comments

MRSAT.RRF

ATN

Attribute name

  NA

concept.conceptProperty.propertyQualifier.propertyQualifierId

If the STYPE points to SAUI then the value is loaded as a property qualifier attribute

MRSAT.RRF

ATV

Attribute value

  NA

concept.conceptProperty.propertyQualifier.content

If the STYPE points to SAUI then the value is loaded as a property qualifier attribute

MRCONSO.RRF

SAB

  None

x

concept.conceptProperty.source.content

No comments  

MRCONSO.RRF

SAB 
 

None

x

concept.conceptProperty.propertyQualifier.propertyQualifierId

Hard coded as constant in java file as "source-code"

MRCONSO.RRF

CODE

None 

x

concept.conceptProperty.propertyQualifier.content

No comments  

MRCONSO.RRF

CODE 
 

None

x

concept.conceptProperty.propertyQualifier.propertyQualifierId

Hard coded as constant in java file as "AUI"

MRCONSO.RRF

AUI

None 

x

concept.conceptProperty.propertyQualifier.content

No comments  

MRCONSO.RRF

AUI 
 

None

NA 

concept.presentation.representationalForm

When ATN value is EV this presentation will be given a representationalForm of "Abbrev."

MRCONSO.RRF

TTY

Term type in source

NA 

concept.presentation.representationForm

When TTY value is FN then representationalForm is represented as "Full Form" Otherwise the representationalForm is the same as the TTY source (i.e. if TTY is PT then representationalForm is PT.) PT is one of the preferred presentations.

MRCONSO.RRF  

TTY

Term type in source

NA 

concept.conceptProperty.propertyQualifier.propertyQualifierId

Hard coded as "HCD"

MRHIER.RRF

HCD

Source asserted hierarchical number or code for this atom in this context

NA 

concept.conceptProperty.propertyQualifier.content

This propertyQualifier is present when the HCD is populated in the the MRHIER file. The corresponding code and property for concept or code is qualified as a code or concept with a context derived heirarchy.

MRREL.RRF

CUI1

Unique identifier for first concept

NA 

None

No comments

MRREL.RRF

AUI1

Unique identifier for first atom

NA 

None

No comments

MRCONSO.RRF

CODE

Unique Identifier or code for string in source

NA 

ConceptReference.conceptCode

(Model element is a ResolvedConceptReference with the value sourceOf attached to the appropriate AssociationList containing this particular REL or RELA association name.) Mapping to the CODE depends upon the CUI or a combination of CUI and AUI values. If the CODE value is "NOCODE" then LexBIG concatenates "NOCODE" with a "-" and the CUI value. Target or source code value requires use of the DIR flag which indicates the directionality of the relationship in REL or RELA. CUI1 can be used as a pointer to the source CODE value if DIR equals Y, else CUI1 is the targetCode. Similarly, if an AUI exists AUI1 can be an indicator for CODE value to be either or source or target depending on the DIR flag.

MRREL.RRF

CUI2

Unique identifier for second concept

NA 

None

No comments

MRREL.RRF

AUI2

Unique identifier for second atom

NA 

None

No comments

MRCONSO.RRF

CODE

Unique Identifier or code for string in source

NA 

ConceptReference.conceptCode

(Model element is a ResolvedConceptReference with the value targetOf attached to the appropriate AssociationList containing this particular REL or RELA association name.) Mapping to the CODE depends upon the CUI or a combination of CUI and AUI values. If the CODE value is "NOCODE" then LexBIG concatenates "NOCODE" with a "-" and the CUI value. Target or source code value requires use of the DIR flag which indicates the directionality of the relationship in REL or RELA. CUI2 can be used as a pointer to the source CODE value if DIR equals Y, else CUI1 is the targetCode. Similarly, if an AUI exists AUI2 can be an indicator for CODE value to be either or source or target depending on the DIR flag.

MRREL.RRF

DIR

Source asserted directionality flag

NA 

None

The UMLS directional flag. Y indicates that this is the direction of the RELA relationship in its source; N indicates that it is not; otherwise indicates that it is not important or has not yet been determined. (If blank RELA, we interpret as 'N', based on empirical review of meta files).

MRREL.RRF

RELA

Relationship attribute

NA 

association.id (id inherited from Entity)

Source defined associations. If RELA value is "inverse_isa" then it is changed to "hasSubtype." All others mapped as defined in source.

MRREL.RRF

REL

Relationship

NA 

association.id (id inherited from Entity)

UMLS defined associations

MRSAT.RRF

METAUI

Metathesaurus asserted unique identifier

NA 
 

None

Presence of RUI in MRSAT.RRF METAUI column indicates the association defined in MRREL has an association qualifier. Currently only MedDRA uses these.

MRSAT.RRF

ATN

  None  

NA

AssociatedConcept.nameAndValueList.name

No comments

MRSAT.RRF

ATV

None 
 

NA

AssociationQualification.nameAndValueList.content

No comments  

MRSAT.RRF

  ATV  

None

NA 

AssociatedConcept.nameAndValueList.name

qualifier name is hard coded to "HCD" This association qualifier is attached to an association when the HCD field in MRHIER.RRF is populated. Associations are identified by evaluating a structured series of AUI's that describe the path to root (PTR field in MRHIER) Once these associations are identified they have and association qualifier attached to them with the value of the HCD loaded as the qualifier.

MRHIER.RRF

HCD

  None  

NA

AssociationQualification.nameAndValueList.content

No comments

MRSAB.RRF

SSN

Source short name

  NA

association.codingSchemeId (Inherited from Entity)

No comments

MRREL.RR

REL or RELA

Relationship or Relationship attribute

  NA

association.forwardName

Unqualified REL or RELA value (inverse_isa remains the same)

MRDOC.RRF

EXPL

Detailed explanation

  NA

association.reverseName

Where DOCKEY in MRDOC equals REL or RELA and value is the association name and TYPE is REL or RELA name prepended to "_inverse".

  MRDOC.RRF  

EXPL  

Detailed explanation

  NA

association.inverse

Hard coded as a blank string.

  MRDOC.RRF  

EXPL  

Detailed explanation

  NA

association.isAntiReflexive

Hard coded to null.

  MRDOC.RRF  

EXPL  

Detailed explanation

  NA

association.isAntiSymmetric

Hard coded to null.

  MRDOC.RRF  

EXPL  

Detailed explanation

  NA

association.isAntiTransitive

Hard coded to null.

  MRDOC.RRF  

EXPL  

Detailed explanation

  NA

association.isAntiTransitive

Hard coded to null.

  MRDOC.RRF  

EXPL  

Detailed explanation

  NA

association.isNavigable

Hard coded as Boolean with value true.

  MRDOC.RRF  

EXPL  

Detailed explanation

  NA

association.isReflexive

Hard coded to null.

  MRDOC.RRF  

EXPL  

Detailed explanation

  NA

association.isReverseFunctional

Hard coded to null.

  MRDOC.RRF  

EXPL  

Detailed explanation

  NA

association.isSymmetric

Hard coded to null.

MRREL.RRF

SAB, REL, RELA

Source abbreviation

  NA

association.isTransitive

True when the name of the association can be mapped to a source defined in the SAB attribute of MRREL.RRF. Not the SAB value itself, but extrapolated from it using SAB to REL, RELA relationship.

MRREL.RRF

SAB, REL, RELA 

Source abbreviation

NA

association.isTranslationAssociation

Hard coded to null.

MRREL.RRF

SAB, REL, RELA

Source abbreviation

NA 

association.targetCodingScheme

Hard coded to null.

MRREL.RRF

SAB, REL, RELA

Source abbreviation

NA

association.entityDescription.content (inheritance path for entityDescription is Entity->versionableAndDescribable)

Hard coded to: "UMLS-defined relationships"

MRREL.RRF

SAB, REL, RELA

Source abbreviation

NA

relations.dc

If REL, this is hard coded as "UMLS-Relations" if RELA then it is hard coded to "Relations"

MRREL.RRF

REL, RELA

  None

x

propertyLink.link

This is a link established when the MRREL.RRF file contains a relationship where the CUI is related to itself. Under these conditions the relationship is mapped as a property link with the MRREL defined relationship mapped as the link value.

MRREL.RRF

REL, RELA 

None

x

propertyLink.sourceProperty

Generated as a propertyId for concept, ex: "T-10" This is retrieved based on the AUI value in MRCONSO.RRF from the entityPropertyMultiAttrib table where the AUI equals the attributeValue column.

MRREL.RRF

REL, RELA

None

x

propertyLink.targetProperty

Generated as a propertyId for concept, ex: "T-10" This is retrieved based on the AUI value in MRCONSO.RRF from the entityPropertyMultiAttrib table where the AUI equals the attributeValue column.

Document Header

format-version

—

Not mapped

Document Header

data-version

CodingScheme.representsVersion

Creates a codingSchemeVersion and SystemRelease record. If not specified, then hard coded "UNASSIGNED"

Document Header

version

CodingScheme.representsVersion

Deprecated - use data-version if present.

Document Header

date

—

Not mapped

Document Header

saved-by

—

Ignored but included if contained in the remark entity.

Document Header

auto-generated-by

—

Ignored but included if contained in the remark entity.

Document Header

subsetdef

—

Not mapped.

Document Header

import

—

Deprecated - Imports are used to assemble a larger document from smaller.

Document Header

typeref

—

Deprecated.

Document Header

synonymtypedef

—

Not mapped.

Document Header

idspace

—

Not mapped.The idspace is a triple - localName, URN and description.

Document Header

default-relationship-id-prefix

—

Not mapped.

Document Header

id-mapping

CodingScheme.supportedAssociation

This is more generalized than the LexGrid model, as it supports mapping between any id's. Note that its primary purpose, however, is to handle supportedAssociation.

Document Header

remark

CodingScheme.entityDescription

Will combine multiple remark entities into the entityDescription.

Document Header

default-namespace

codingScheme.codingScheme

Will use default-namespace if provided; otherwise will use filename without the extension.

Document Header

default-namespace

codingScheme.formalName

Will use default-namespace if provided; otherwise will use filename without the extension.

Document Header HeaderDocument

default-namespace

codingScheme.registeredName

Combination of "urn:lsid:bioontology.org:" and if provided, the value in "default-namespace"; but if not will use filename without the extension.

codingScheme.defaultLanguage

Hard coded "en"

codingScheme.isNative

Hard coded "true"

Stanza

id

CodedEntry.conceptCode

No notes

Stanza

name

CodedEntry.entityDescription

No notes

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d0bbc8b2133fea23-ae8c6652-49a54f6a-8469bbec-e4c3aaf3db4f8dd6720c0338"><ac:plain-text-body><![CDATA[

CodedEntry.presentation['textualPresentation'].text

No notes

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="10e264e5032c1546-5bcb196c-45ce4b3b-9517a20d-122c537b996ad9c183ef1426"><ac:plain-text-body><![CDATA[

CodedEntry.presentation['textualPresentation'].isPreferred = true

No notes

]]></ac:plain-text-body></ac:structured-macro>

Stanza

alt_id

No notes

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a3aa11bcfd4c2fc6-ea1b8284-41064925-a9caa620-73e392fd875cab45f763146a"><ac:plain-text-body><![CDATA[

CodedEntry.property['alt_id'].propertyId

No notes

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="ca1724d156abad87-9529f772-43b143e9-858da6e9-8694a938180fbf5ee5b554a8"><ac:plain-text-body><![CDATA[

CodedEntry.property['alt_id'].text

No notes

]]></ac:plain-text-body></ac:structured-macro>

Stanza

is_anonymous

CodedEntry.isAnonymous = true

No notes

Stanza

is_obsolete

CodedEntry.isActive = false

No notes

Stanza

def

CodedEntry.definition

No notes

CodedEntry.definition.isPreferred = true

No notes

Stanza

def.dbxref

—

See dbxref

Stanza

comment

CodedEntry.comment.text

No notes

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0d12a50ac953949e-95c05f6f-44014750-8c9b8102-17df3d180a5dbb9a21dc1b7f"><ac:plain-text-body><![CDATA[

Stanza

subset

property[subset tag]

See subsetdef

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="eeceb66620441590-b36416bd-42a24f4a-8e2981bd-b7329fcbc810100f3d6e21f2"><ac:plain-text-body><![CDATA[

Stanza

synonym

presentation['textualPresentation'].text

No notes

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1e85995603cc74c9-7b5f9288-4f8948d4-8659b48f-a2789dd1da64b62649b5618a"><ac:plain-text-body><![CDATA[

Stanza

synonym.scope

presentation['textualPresentation'].degreeOfFidelity

No notes

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a75b9ecb43ec7d89-a7480430-4bfa4589-a400bca4-8676b86f593ff0c5ba6ad7d7"><ac:plain-text-body><![CDATA[

Stanza

synonym.type

presentation['textualPresentation'].representationalForm

No notes

]]></ac:plain-text-body></ac:structured-macro>

Stanza

synonym.dbxref

---

See dbxref

Stanza

exact_synonym

—

See synonym

Stanza

narrow_synonym

—

See synonym

Stanza

broad_synonym

—

See synonym

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5de69a9f4f611425-af6cbf62-41064193-a4b68ff6-51d0267d724957f031f05a54"><ac:plain-text-body><![CDATA[

Stanza

xref

associations.['mapsTo']

No notes

]]></ac:plain-text-body></ac:structured-macro>

Stanza

xref_analog

—

See synonym

Stanza

xref_unk

None

No notes

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f625ed6373b3ee73-7984f105-480b403e-b8999167-7032fc5903fdf43c62995704"><ac:plain-text-body><![CDATA[

Stanza

is_a

associations.['hasSubtype']

Reverse of the source and target.

]]></ac:plain-text-body></ac:structured-macro>

Stanza

is_a.namespace

None

If present, the supplied namespace becomes the owning "codingScheme".

Stanza

is_a.derived

associations.hasSubtype.associationQualifier

If present, need to include derived in the supportedAssociationQualifiers section

Stanza

intersection_of

None

Processed the same way that OWL intersection operator is processed. This includes creation of anonymous sets.

Stanza

union_of

—

Same as OWL

Stanza

disjoint_from

—

Same as OWL

Stanza

relationship

associations.

No notes

Stanza

relationship.not_necessary

associations..associationQualifier

No notes

Stanza

relationship.inverse_necessary

associations..associationQualifier

No notes

Stanza

relationship.namespace

None

If present, the supplied namespace becomes the owning "codingScheme".

Stanza

relationship.derived

associations..associationQualifier

No notes

Stanza

relationship.cardinality

associations..associationQualifier

No notes

Stanza

relationship.maxCardinality

associations..associationQualifier

No notes

Stanza

relationship.minCardinality

associations..associationQualifier

No notes

Stanza

is_obsolete

codedEntry.isActive = false

No notes

Stanza

replaced_by

None

No notes

Stanza

consider

—

Not mapped

Stanza

use_term

—

Deprecated

dbxref

dbxref name

CodedEntry..source

No notes

supportedSource

None

dbxref name format is inconsistent. In most cases, it can be the localName of supportedSource, but special processing may be necessary in the case of URL's, etc

dbxref

dbxref description

—

Not mapped.

dbxref

trailing modifiers

—

Not mapped.

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="6cd2dddcdd163e62-282fdbc4-4f83403f-871db12a-bf6369146c4b7a600995982d"><ac:plain-text-body><![CDATA[

typeDef Stanza

domain

associations.['has_domain']

No notes

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="510733225ed4adc2-6db72387-4bce44cf-bfe4a646-690605d8729de6315b1fd257"><ac:plain-text-body><![CDATA[

typeDef Stanza

range

associations.['has_range']

No notes

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="36f1d31b4146b7af-7411a7a3-4b984e52-8212bd33-2e857d887f0e20365d733eb7"><ac:plain-text-body><![CDATA[

typeDef Stanza

is_cyclic

property['is_cyclic']

No notes

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="45e2264a2d0399a1-74ab65de-4e3a4176-9321a665-11f2c1dd95823ca4d767f885"><ac:plain-text-body><![CDATA[

typeDef Stanza

is_reflexive

property['is_reflexive']

No notes

]]></ac:plain-text-body></ac:structured-macro>

association.isReflexive

No notes

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="6a5ca6cb8464b5c4-c1e3a3ab-46e947fd-92e9af1f-51c43508d5c0a67938c839af"><ac:plain-text-body><![CDATA[

typeDef Stanza

is_symmetric

property['is_symmetric']

No notes

]]></ac:plain-text-body></ac:structured-macro>

association.isSymmetric

No notes

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="070b5c9eb8839be4-a7e54ab5-44d54997-8156b316-0c8a2e3c27e43d62bcd00ac4"><ac:plain-text-body><![CDATA[

typeDef Stanza

is_transitive

property['is_transitive']

No notes

]]></ac:plain-text-body></ac:structured-macro>

association.isTransitive

No notes

typeDef Stanza

inverse_of

association.inverse

No notes

instance stanza

id

same rules as general stanza

Same rules as general stanza

instance stanza

name

same rules as general stanza

Same rules as general stanza

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="fb0983f102658432-bf79dfc8-4da34d8d-ad83bbee-5b048bf12302578af258cc50"><ac:plain-text-body><![CDATA[

instance stanza

instance_of

association['has_instance']

No notes

]]></ac:plain-text-body></ac:structured-macro>

instance stanza

CodedEntry.property.property=""

Data type properties go in Coded Entry property section

Model

<modelID>

<codingSchemeName>

No notes

<name>

<formalName>

No notes

<registeredName>

No notes

<defaultLanguage>

en*

No notes

<versionNumber>

<representsVersion>

No notes

<isNative>

0*

No notes

<approximateNumberofConcepts>

Result of count on concept bearing table?

No notes

<firstRelease>

MISSING

No notes

<modifiedRelease>

MISSING

No notes

<deprecated>

MISSING

No notes

<description>

<entityDescription>

No notes

<copyright>

MISSING

No notes

VCS_code_system

codeSystemId

codingScheme.registeredName

Moved to metadata file.

codeSystemType

commonTypes::Properties

This is an HL7 specific code system property to distinguish internal vs external code systems. Moved to metadata file.

codeSystemName

concept.conceptCode

Moved to metadata file.

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="8b4de0c5716e187e-f956995a-4e7247eb-a9169198-e6df568796781ff70ada4816"><ac:plain-text-body><![CDATA[

codeSystemName

concept.presentation['textualPresentation'].text

No notes

]]></ac:plain-text-body></ac:structured-macro>

fullName

codingScheme.formalName

No notes

description

codingScheme.entityDescription

Moved to metadata file.

releaseId

codingScheme.representsVersion

Moved to metadata file.

copyrightNotice

codingScheme.copyright

Moved to metadata file.

literal('en')

codingScheme.defaultLanguage

Moved to metadata file.

VCS_concept_code_xref

internalId

None

No notes

Concept Code

concept.conceptCode

No notes

RIM db column conceptCode2

Case Difference

commonTypes::Properties

Basically a property to outline whether there are case differences in the Concept Code or not (mainly used, but not restricted tor units of measure)

RIM db column codeInstance

Status

concept.isActive=(conceptStatus=='A'?)

No notes

RIM db column conceptStatus

concept.conceptStatus

Not used by HL7. A = isActive, R = retired

VCS_concept_designation

internalId

foreign key

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="74ecee3baa447288-de5121ff-42b7443f-8236ac20-b63a6b02066a1d33bfb2cfed"><ac:plain-text-body><![CDATA[

designation

concept.presentation['textualPresentation'].text

No notes

]]></ac:plain-text-body></ac:structured-macro>

designationSeq

No notes

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="cec0f3277ec7b6ea-da90b985-41134899-80c297f8-4c44bc9acfdb433974864722"><ac:plain-text-body><![CDATA[

language

concept.presentation['textualPresentation'].language

Can be omitted if language = default language

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0ae180ab3e840cc1-0f368f4b-4cfe40ed-a200b731-351ee5247627d2def2c14d59"><ac:plain-text-body><![CDATA[

preferredForLanguage

concept.presentation['textualPresentation'].isPreferred

No notes

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="68f4a9f347fb6b5f-a33beee3-4b1b4167-91c5b8ee-532b428d36dbeb9cb48355ba"><ac:plain-text-body><![CDATA[

VCS_concept_description

internalId

with(codeSystem[deref(internalId)].concept[deref(internalId)]).definition

foreign key

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="840cc42c445b044e-e678ad1a-450e4263-96b99f1a-757f4c817179e8f8a14a9a95"><ac:plain-text-body><![CDATA[

description

concept.presentation['textualPresentation'].text

No notes

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="dccff33895f0c5df-2200d5a1-49434fa0-8fe7acdf-79c8a285ef3dafee3b724933"><ac:plain-text-body><![CDATA[

language

concept.presentation['textualPresentation'].language

No notes

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5e9eb20ffffd26d3-63316350-4a1a4af5-b82b8607-09b0d72ee2b42dd912ef1cd2"><ac:plain-text-body><![CDATA[

literal('true')

concept.presentation['textualPresentation'].isPreferred

No notes

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="528ff516242f7c3d-36042475-48b044a5-bfd49960-46a67d9981c9f3b31263a2ec"><ac:plain-text-body><![CDATA[

uniqueId()

concept.presentation['textualPresentation'].propertyId

No notes

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e3fc540d1981e43e-529397be-465e4e14-a447b99a-4d669ecdcdf736105b2b7237"><ac:plain-text-body><![CDATA[

literal('definition')

concept.presentation['textualPresentation'].property

No notes

]]></ac:plain-text-body></ac:structured-macro>

VCS_concept_property

internalId

None

foreign key

propertyCode

concept.property.property

No notes

propertySeq

None

Currently not used by HL7

propertyValue

concept.property.text

No notes

language

concept.property.language

No notes

VCS_concept_relationship

relationCode

association.association

No notes

sourceInternalId

associationInstance.sourceConcept

No notes

targetInternalId

associationTarget.targetConcept

No notes

Model

modelID

systemRelease.releaseId

No notes

name

service.service

No notes

versionNumber

service.version

No notes

lastModifiedDate

systemRelease.releaseDate

No notes

developingOrganization

systemRelease.releaseAgency

No notes

committeeID

Note

No notes

description

systemRelease.entityDescription

No notes

concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId)

systemRelease.releaseURN

No notes

literal('true')

systemRelease.isLatest

Also have to set the prior release isLatest to false

preceding-sibling/releaseOrder + 1

systemRelease.releaseOrder

No notes

Model

modelID

commonTypes::Properties

No notes

(Special mapping for NCI)

name

codingScheme.localName

No notes

versionNumber

codingScheme.representsVersion

No notes

lastModifiedDate

commonTypes::Properties

No notes

developingOrganization

commonTypes::Properties

No notes

committeeID

None

No notes

description

codingScheme.entityDescription

No notes

concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId)

codingScheme.registeredName

No notes

literal('true')

commonTypes::Properties

Also have to set the prior release isLatest to false

preceding-sibling/releaseOrder + 1

commonTypes::Properties

No notes

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f98320262c8d3f82-41ed2d27-4fad4a09-aceebd86-0e62511e231c8709f75c32fb"><ac:plain-text-body><![CDATA[

RIM_vocabulary_domain

vocDomain

codingscheme["VocabularyDomain"].concept.conceptCode

Vocabulary Domains are carried in a code system of vocabulary domains.

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c43b2e3c3e4f8e9d-4ab197d9-43264693-b632bee4-b31acb0fa64683079538c5d4"><ac:plain-text-body><![CDATA[

codingscheme["VocabularyDomain"].concept.presentation["textualPresentation"].text

preferredPresentation

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="92b43d309eb441d3-e099831e-4f564c1a-97b18b79-88cf7ab87890503ac185fbb6"><ac:plain-text-body><![CDATA[

description

codingscheme["VocabularyDomain"].concept.definition.text

preferredDefinition for code

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c81a6ee1514a8ee9-08bfff05-427f4b65-bb708cde-ed32eee5ce891e9d836106c9"><ac:plain-text-body><![CDATA[

restrictsDomain

codingscheme["VocabularyDomain"].association["hasSubtype"].sourceConcept

Should this be hasSubtype or something else?

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a7339941042b86ec-be598ed2-44964754-8a759484-4760a54cf7742770caf7c838"><ac:plain-text-body><![CDATA[

codingscheme["VocabularyDomain"].association["hasSubtype"].targetconcept = vocDomain

No notes

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c8f96e08885ce9e3-1217ecbd-4bf74fce-af919f76-8b6b79cd20c9706e2e1870f4"><ac:plain-text-body><![CDATA[

VOC_code_reference

usedToBuildValueSet

with(valueDomain[registeredName=current()/.])

No notes

]]></ac:plain-text-body></ac:structured-macro>

referencesConceptCode

...valueDomainEntry/conceptCode

1) id is synthesized
2) Only stored if isHeadCode h1. false or includeReferencedCode true

referencesInternalId

None

Internal id's aren't exposed in lexGrid

relationship

...valueDomainEntry/includeChildren = (relationship == 'hasSubtype')

Won't deal w/ non-hasSubtype relationships, but HL7 doesn't have any.

includeReferencedCode

...valueDomainEntry/isSelectable

No notes

Not in current implementation

leafOnly

None

Not used in HL7 Model

directChildrenOnly

None

Not used in HL7 Model

isHeadCode

None

Only used when referenced in VOC_value_set_constructor.

referencesCodeSystem

.../valueDomainEntry.codingScheme

Shortcut in HL7 model. Must = VOC_value_set.basedOnCodeSystem

arbitraryUniqueValue()

.../valueDomainEntry.id

Notes

VOC_registered_code_system

codeSystemId

None

VOC_registered_code_system isn't currently transferred to Lexgrid

sponsor

None

No notes

publisher

None

No notes

versionReportingMethod

None

No notes

licensingInformation

None

This field should really be transfer to copyright?

inUMLS

None

No notes

systemSpecificLocatorInfo

None

No notes

uri

None

No notes

isExternal

None

No notes

VOC_value_set

valueSetId

valueDomain.registeredName

No notes

valueSetName

valueDomain.valueDomain

Name is the key in LexGrid, and is optional in HL7 - will need to be addressed.

basedOnCodeSystem

valueDomain.defaultCodingScheme

Optional in HL7, required in LexGrid.

description

valueDomain.entityDescription

No notes

definingExpression

None

Not used.

allCodes

None

No notes

isTaxonomicSet

None

No mapping available

valueSetAuthority

None

Included in valueSetID

valueSetNumber

None

No notes

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="7bbbae8a2e633ddd-777817b2-4a7444bb-9229b530-519817b6ef8d7448fd5d82e7"><ac:plain-text-body><![CDATA[

VOC_value_set_constructor

usedToBuildValueSet

new valueDomainEntry(parent = valueDomain[valueSetId=current()/.],id=unique())

No notes

]]></ac:plain-text-body></ac:structured-macro>

includesOrExcludesSet

valueDomainEntry.includesValueDomain

No notes

includeHeadCode

valueDomainEntry.isSelectable

No notes

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1252f0e51e1c3523-972c8c76-488f46c0-ae928fb0-e2646078aa1dc3863d3c6a60"><ac:plain-text-body><![CDATA[

valueDomainEntry.conceptCode = VOC_code_reference[usedToBuildValueSet=current().usedToBuildValueSet and isHeadCode=true].referencesConceptCode

Assumes that there always is a head code.

]]></ac:plain-text-body></ac:structured-macro>