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OBO Class | OBO Entity | LexGrid Model Element | Notes | ||
---|---|---|---|---|---|
Document Header | format-version | — | Not mapped | ||
Document Header | data-version | CodingScheme.representsVersion | Creates a codingSchemeVersion and SystemRelease record. If not specified, then hard coded "UNASSIGNED" | ||
Document Header | version | CodingScheme.representsVersion | Deprecated - use data-version if present. | ||
Document Header | date | — | Not mapped | ||
Document Header | saved-by | — | Ignored but included if contained in the remark entity. | ||
Document Header | auto-generated-by | — | Ignored but included if contained in the remark entity. | ||
Document Header | subsetdef | — | Not mapped. | ||
Document Header | import | — | Deprecated - Imports are used to assemble a larger document from smaller. | ||
Document Header | typeref | — | Deprecated. | ||
Document Header | synonymtypedef | — | Not mapped. | ||
Document Header | idspace | — | Not mapped.The idspace is a triple - localName, URN and description. | ||
Document Header | default-relationship-id-prefix | — | Not mapped. | ||
Document Header | id-mapping | CodingScheme.supportedAssociation | This is more generalized than the LexGrid model, as it supports mapping between any id's. Note that its primary purpose, however, is to handle supportedAssociation. | ||
Document Header | remark | CodingScheme.entityDescription | Will combine multiple remark entities into the entityDescription. | ||
Document Header | default-namespace | codingScheme.codingScheme | Will use default-namespace if provided; otherwise will use filename without the extension. | ||
Document Header | default-namespace | codingScheme.formalName | Will use default-namespace if provided; otherwise will use filename without the extension. | ||
HeaderDocument | default-namespace | codingScheme.registeredName | Combination of "urn:lsid:bioontology.org:" and if provided, the value in "default-namespace"; but if not will use filename without the extension. | ||
HeaderDocument | default-namespace | codingScheme.defaultLanguage | Hard coded "en" | ||
HeaderDocument | default-namespace | codingScheme.isNative | Hard coded "true" | ||
Stanza | id | CodedEntry.conceptCode | No notes | ||
Stanza | name | CodedEntry.entityDescription | No notes | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="369ad256833acbe5-8d65fff4-405646d0-9e1fa9dc-fbba2a0030b081d89ea42fab"><ac:plain-text-body><![CDATA[ | Stanza | name | CodedEntry.presentation['textualPresentation'].text | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="23321ca09fe5818c-b7ff540b-47694589-a996b5e1-fcd8e4416640beba974f35ed"><ac:plain-text-body><![CDATA[ | Stanza | name | CodedEntry.presentation['textualPresentation'].isPreferred = true | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | alt_id | None | No notes | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="08c0ba49e6ab7594-02db1a9d-4a044715-b7a1be6b-ceb59ca85c02f52564c93e16"><ac:plain-text-body><![CDATA[ | Stanza | alt_id | CodedEntry.property['alt_id'].propertyId | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="9485f37c7bd88828-46022dae-4a77474b-ada88e76-9e5181c807ed390a949fe2a3"><ac:plain-text-body><![CDATA[ | Stanza | alt_id | CodedEntry.property['alt_id'].text | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | is_anonymous | CodedEntry.isAnonymous = true | No notes | ||
Stanza | is_obsolete | CodedEntry.isActive = false | No notes | ||
Stanza | def | CodedEntry.definition | No notes | ||
Stanza | def | CodedEntry.definition.isPreferred = true | No notes | ||
Stanza | def.dbxref | — | See dbxref | ||
Stanza | comment | CodedEntry.comment.text | No notes | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="046f5d0e3a8b113e-de7561db-45184ae6-abdca5fc-88bff6f4566433ffa986c680"><ac:plain-text-body><![CDATA[ | Stanza | subset | property[subset tag] | See subsetdef | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0fe94a0e0aca68c2-264441c2-4400435c-9ec58889-9ad243d5d95cc1c50d2d6bef"><ac:plain-text-body><![CDATA[ | Stanza | synonym | presentation['textualPresentation'].text | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="49ecc0f4fe18ab0e-35244f33-4cae4c70-af61aec5-5fe2c64fa42ccfe2e01fd1af"><ac:plain-text-body><![CDATA[ | Stanza | synonym.scope | presentation['textualPresentation'].degreeOfFidelity | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f206e50c45293734-3690b1e4-47ff40b3-9828af32-b84d30d3d35d3b8a7dca6c32"><ac:plain-text-body><![CDATA[ | Stanza | synonym.type | presentation['textualPresentation'].representationalForm | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | synonym.dbxref | --- — | See dbxref | ||
Stanza | exact_synonym | — | See synonym | ||
Stanza | narrow_synonym | — | See synonym | ||
Stanza | broad_synonym | — | See synonym | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="6662417ec5baa320-e5d6c538-454b4cf5-aecfa43a-de3c37c382272456460e7812"><ac:plain-text-body><![CDATA[ | Stanza | xref | associations.['mapsTo'] | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | xref_analog | — | See synonym | ||
Stanza | xref_unk | None | No notes | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="6c3e6f130565f352-21dc0cc5-48b34c6d-a5cf90d7-7d822e59e61a9660f1bde2ab"><ac:plain-text-body><![CDATA[ | Stanza | is_a | associations.['hasSubtype'] | Reverse of the source and target. | ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | is_a.namespace | None | If present, the supplied namespace becomes the owning "codingScheme". | ||
Stanza | is_a.derived | associations.hasSubtype.associationQualifier | If present, need to include derived in the supportedAssociationQualifiers section | ||
Stanza | intersection_of | None | Processed the same way that OWL intersection operator is processed. This includes creation of anonymous sets. | ||
Stanza | union_of | — | Same as OWL | ||
Stanza | disjoint_from | — | Same as OWL | ||
Stanza | relationship | associations. | No notes | ||
Stanza | relationship.not_necessary | associations..associationQualifier | No notes | ||
Stanza | relationship.inverse_necessary | associations..associationQualifier | No notes | ||
Stanza | relationship.namespace | None | If present, the supplied namespace becomes the owning "codingScheme". | ||
Stanza | relationship.derived | associations..associationQualifier | No notes | ||
Stanza | relationship.cardinality | associations..associationQualifier | No notes | ||
Stanza | relationship.maxCardinality | associations..associationQualifier | No notes | ||
Stanza | relationship.minCardinality | associations..associationQualifier | No notes | ||
Stanza | is_obsolete | codedEntry.isActive = false | No notes | ||
Stanza | replaced_by | None | No notes | ||
Stanza | consider | — | Not mapped | ||
Stanza | use_term | — | Deprecated | ||
dbxref | dbxref name | CodedEntry..source | No notes | ||
dbxref | supportedSource | None | dbxref name format is inconsistent. In most cases, it can be the localName of supportedSource, but special processing may be necessary in the case of URL's, etc | ||
dbxref | dbxref description | — | Not mapped. | ||
dbxref | trailing modifiers | — | Not mapped. | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="80dd5cf7637c6729-95015fae-4f964f4f-965ab6f6-75456cac0398a2b91d281697"><ac:plain-text-body><![CDATA[ | typeDef Stanza | domain | associations.['has_domain'] | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c9cc86377b2c89a4-d71b0a03-4be54657-94bd9e83-51f56401a58d74c2b5f7e9bf"><ac:plain-text-body><![CDATA[ | typeDef Stanza | range | associations.['has_range'] | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="417551fb8d8b8c0b-12e568cd-412641ec-90339415-3d1d0c62d2ef34591c166b29"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_cyclic | property['is_cyclic'] | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="6e9f657f6de6d572-46a87e26-4e3e48ad-95448a3e-b83e2deba162ff3a815f549d"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_reflexive | property['is_reflexive'] | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
typeDef Stanza | is_reflexive |
| | association.isReflexive | No notes |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="718eabfc2d643119-f6dd54ec-47d947b6-94f49376-ab4b79a1a5eea1d689bde9f3"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_symmetric | property['is_symmetric'] | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
typeDef Stanza | is_symmetric |
| | association.isSymmetric | No notes |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="ed0f0c0a910f0a12-19308031-45ea4d6e-9c10a0d4-0d4c6875274235e49fd2c110"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_transitive | property['is_transitive'] | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
typeDef Stanza | is_transitive |
| | association.isTransitive | No notes |
typeDef Stanza | inverse_of | association.inverse | No notes | ||
instance stanza | id | same rules as general stanza | Same rules as general stanza | ||
instance stanza | name | same rules as general stanza | Same rules as general stanza | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c7cdac8975000d39-6270b185-4d954b9f-91ea8238-75c90ffb9a9c08d2248e9f9b"><ac:plain-text-body><![CDATA[ | instance stanza | instance_of | association['has_instance'] | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
instance stanza | instance_of | CodedEntry.property.property="" | Data type properties go in Coded Entry property section |
...
HL7 Table | HL7 Column | LexGrid Model Element | Notes | Intentionally Not mapped | Outstanding issues | ||
---|---|---|---|---|---|---|---|
Model | <modelID> | <codingSchemeName> | No notes |
|
| ||
Model | <name> | <formalName> | No notes |
|
| ||
Model | <registeredName> |
| No notes |
|
| ||
Model | <defaultLanguage> | en* | No notes |
|
| ||
Model | <versionNumber> | <representsVersion> | No notes |
|
| ||
Model | <isNative> | 0* | No notes |
|
| ||
Model | <approximateNumberofConcepts> | Result of count on concept bearing table? | No notes |
|
| ||
Model | <firstRelease> | MISSING | No notes |
|
| ||
Model | <modifiedRelease> | MISSING | No notes |
|
| ||
Model | <deprecated> | MISSING | No notes |
|
| ||
Model | <description> | <entityDescription> | No notes |
|
| ||
Model | <copyright> | MISSING | No notes |
|
| ||
VCS_code_system | codeSystemId | codingScheme.registeredName | Moved to metadata file. |
|
| ||
VCS_code_system | codeSystemType | commonTypes::Properties | This is an HL7 specific code system property to distinguish internal vs external code systems. Moved to metadata file. |
|
| ||
VCS_code_system | codeSystemName | concept.conceptCode | Moved to metadata file. |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e680086c6ea7b494-eed6b143-43fa4f11-84059a2d-68345e2a33fd02fa179cdc57"><ac:plain-text-body><![CDATA[ | VCS_code_system | codeSystemName | concept.presentation['textualPresentation'].text | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
VCS_code_system | fullName | codingScheme.formalName | No notes |
|
| ||
VCS_code_system |
| description | codingScheme.entityDescription | Moved to metadata file. |
|
| |
VCS_code_system | releaseId | codingScheme.representsVersion | Moved to metadata file. |
|
| ||
VCS_code_system | copyrightNotice | codingScheme.copyright | Moved to metadata file. |
|
| ||
VCS_code_system | literal('en') | codingScheme.defaultLanguage | Moved to metadata file. |
|
| ||
VCS_concept_code_xref | internalId | None | No notes |
|
| ||
VCS_concept_code_xref | Concept Code | concept.conceptCode | No notes | RIM db column conceptCode2 |
| ||
VCS_concept_code_xref | Case Difference | commonTypes::Properties | Basically a property to outline whether there are case differences in the Concept Code or not (mainly used, but not restricted tor units of measure) | RIM db column codeInstance |
| ||
VCS_concept_code_xref | Status | concept.isActive=(conceptStatus=='A'?) | No notes | RIM db column conceptStatus |
| ||
VCS_concept_code_xref |
| concept.conceptStatus | Not used by HL7. A = isActive, R = retired |
|
| ||
VCS_concept_designation | internalId |
| foreign key |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="cdc68716a6651d97-22fd8289-43604b59-a3a58fae-9da19fc9f5310050e6b5ab51"><ac:plain-text-body><![CDATA[ | VCS_concept_designation | designation | concept.presentation['textualPresentation'].text | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
VCS_concept_designation | designationSeq |
| No notes |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="ff6a54e637aad748-42919074-44b54efe-bd64b7c8-5f0c6f096646b892af23053f"><ac:plain-text-body><![CDATA[ | VCS_concept_designation | language | concept.presentation['textualPresentation'].language | Can be omitted if language = default language |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="6e249d58f11ce722-a25015a1-4d864217-a3a188df-8be0837c3d74d2226356eaa5"><ac:plain-text-body><![CDATA[ | VCS_concept_designation | preferredForLanguage | concept.presentation['textualPresentation'].isPreferred | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="9577ad88d4116b8e-7d745253-4a694d6a-b7d7a816-a4ae1c82c1fa65a50525f187"><ac:plain-text-body><![CDATA[ | VCS_concept_description | internalId | with(codeSystem[deref(internalId)].concept[deref(internalId)]).definition | foreign key |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="96af9f937cda736b-5c8b1196-42af4f06-a9b7afce-51d31d83030152c0a230b8a4"><ac:plain-text-body><![CDATA[ | VCS_concept_description | description | concept.presentation['textualPresentation'].text | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f6609b1460ac4ef3-fc05ebf0-41de4c31-823ebc25-38e10661682678b702c5ec82"><ac:plain-text-body><![CDATA[ | VCS_concept_description | language | concept.presentation['textualPresentation'].language | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="de270b0027114cb1-d126055a-4b8a4f21-aac4a774-7179992a889a97cf6ab6b024"><ac:plain-text-body><![CDATA[ | VCS_concept_description | literal('true') | concept.presentation['textualPresentation'].isPreferred | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="7e7e79c890c67e89-0f4c76c3-442c49b7-9c04a677-7150e924145359a5d9f0b15c"><ac:plain-text-body><![CDATA[ | VCS_concept_description | uniqueId() | concept.presentation['textualPresentation'].propertyId | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="b9881d0cad4a7ab4-53f966d1-4c4c44aa-947d9937-c476bc3003de512b6bd78bd1"><ac:plain-text-body><![CDATA[ | VCS_concept_description | literal('definition') | concept.presentation['textualPresentation'].property | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
VCS_concept_property | internalId | None | foreign key |
|
| ||
VCS_concept_property | propertyCode | concept.property.property | No notes |
|
| ||
VCS_concept_property | propertySeq | None | Currently not used by HL7 |
|
| ||
VCS_concept_property | propertyValue | concept.property.text | No notes |
|
| ||
VCS_concept_property | language | concept.property.language | No notes |
|
| ||
VCS_concept_relationship | relationCode | association.association | No notes |
|
| ||
VCS_concept_relationship | sourceInternalId | associationInstance.sourceConcept | No notes |
|
| ||
VCS_concept_relationship | targetInternalId | associationTarget.targetConcept | No notes |
|
| ||
Model | modelID | systemRelease.releaseId | No notes |
|
| ||
Model | name | service.service | No notes |
|
| ||
Model | versionNumber | service.version | No notes |
|
| ||
Model | lastModifiedDate | systemRelease.releaseDate | No notes |
|
| ||
Model | developingOrganization | systemRelease.releaseAgency | No notes |
|
| ||
Model | committeeID | Note | No notes |
|
| ||
Model | description | systemRelease.entityDescription | No notes |
|
| ||
Model | concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) | systemRelease.releaseURN | No notes |
|
| ||
Model | literal('true') | systemRelease.isLatest | Also have to set the prior release isLatest to false |
|
| ||
Model | preceding-sibling/releaseOrder + 1 | systemRelease.releaseOrder | No notes |
|
| ||
Model | modelID | commonTypes::Properties | No notes |
|
| ||
(Special mapping for NCI) | name | codingScheme.localName | No notes |
|
| ||
(Special mapping for NCI) | versionNumber | codingScheme.representsVersion | No notes |
|
| ||
(Special mapping for NCI) | lastModifiedDate | commonTypes::Properties | No notes |
|
| ||
(Special mapping for NCI) | developingOrganization | commonTypes::Properties | No notes |
|
| ||
(Special mapping for NCI) | committeeID | None | No notes |
|
| ||
(Special mapping for NCI) | description | codingScheme.entityDescription | No notes |
|
| ||
(Special mapping for NCI) | concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) | codingScheme.registeredName | No notes |
|
| ||
(Special mapping for NCI) | literal('true') | commonTypes::Properties | Also have to set the prior release isLatest to false |
|
| ||
(Special mapping for NCI) | preceding-sibling/releaseOrder + 1 | commonTypes::Properties | No notes |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="bd0b310b11c25e6e-7bea1d2a-4ae94783-9d1f81d2-372ba9ce3d0c09509c90ed32"><ac:plain-text-body><![CDATA[ | RIM_vocabulary_domain | vocDomain | codingscheme["VocabularyDomain"].concept.conceptCode | Vocabulary Domains are carried in a code system of vocabulary domains. |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="812c8b3d7fb4fdf7-d0b4ecf7-47bb4c1c-9758939d-c93620351d4dedf43483bbf1"><ac:plain-text-body><![CDATA[ | RIM_vocabulary_domain |
| codingscheme["VocabularyDomain"].concept.presentation["textualPresentation"].text | preferredPresentation |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="42d6cbd338af048c-1b320fa2-472245ca-9785aaac-cf764dd0cc4b959f683eb5dc"><ac:plain-text-body><![CDATA[ | RIM_vocabulary_domain | description | codingscheme["VocabularyDomain"].concept.definition.text | preferredDefinition for code |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="12aa90fbceb28182-9f483e0a-4315479b-86ba95fc-fc8918917d8042bd93f6892c"><ac:plain-text-body><![CDATA[ | RIM_vocabulary_domain | restrictsDomain | codingscheme["VocabularyDomain"].association["hasSubtype"].sourceConcept | Should this be hasSubtype or something else? |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="ce32baaac2081f3d-3fb2528f-4fd44ee4-849ebdf7-a2281b1411b7a89fa9b957f0"><ac:plain-text-body><![CDATA[ | RIM_vocabulary_domain |
| codingscheme["VocabularyDomain"].association["hasSubtype"].targetconcept = vocDomain | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="91a9279d8ca177a5-56dcd412-4de44d1f-af7a95b5-e59f76d37e679e9c9cb1f55a"><ac:plain-text-body><![CDATA[ | VOC_code_reference | usedToBuildValueSet | with(valueDomain[registeredName=current()/.]) | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
VOC_code_reference | referencesConceptCode | ...valueDomainEntry/conceptCode | 1) id is synthesized |
|
| ||
VOC_code_reference | referencesInternalId | None | Internal id's aren't exposed in lexGrid |
|
| ||
VOC_code_reference | relationship | ...valueDomainEntry/includeChildren = (relationship == 'hasSubtype') | Won't deal w/ non-hasSubtype relationships, but HL7 doesn't have any. |
|
| ||
VOC_code_reference | includeReferencedCode | ...valueDomainEntry/isSelectable | No notes | Not in current implementation |
| ||
VOC_code_reference | leafOnly | None | Not used in HL7 Model |
|
| ||
VOC_code_reference | directChildrenOnly | None | Not used in HL7 Model |
|
| ||
VOC_code_reference | isHeadCode | None | Only used when referenced in VOC_value_set_constructor. |
|
| ||
VOC_code_reference | referencesCodeSystem | .../valueDomainEntry.codingScheme | Shortcut in HL7 model. Must = VOC_value_set.basedOnCodeSystem |
|
| ||
VOC_code_reference | arbitraryUniqueValue() | .../valueDomainEntry.id | Notes |
|
| ||
VOC_registered_code_system | codeSystemId | None | VOC_registered_code_system isn't currently transferred to Lexgrid |
|
| ||
VOC_registered_code_system |
| sponsor | None | No notes |
|
| |
VOC_registered_code_system | publisher | None | No notes |
|
| ||
VOC_registered_code_system | versionReportingMethod | None | No notes |
|
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VOC_registered_code_system | licensingInformation | None | This field should really be transfer to copyright? |
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VOC_registered_code_system | inUMLS | None | No notes |
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VOC_registered_code_system | systemSpecificLocatorInfo | None | No notes |
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VOC_registered_code_system | uri | None | No notes |
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VOC_registered_code_system | isExternal | None | No notes |
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VOC_value_set | valueSetId | valueDomain.registeredName | No notes |
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VOC_value_set | valueSetName | valueDomain.valueDomain | Name is the key in LexGrid, and is optional in HL7 - will need to be addressed. |
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VOC_value_set | basedOnCodeSystem | valueDomain.defaultCodingScheme | Optional in HL7, required in LexGrid. |
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VOC_value_set | description | valueDomain.entityDescription | No notes |
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VOC_value_set | definingExpression | None | Not used. |
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VOC_value_set | allCodes | None | No notes |
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VOC_value_set | isTaxonomicSet | None | No mapping available |
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VOC_value_set | valueSetAuthority | None | Included in valueSetID |
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VOC_value_set | valueSetNumber | None | No notes |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="80bb81ec598e9c4b-a750464b-490942ae-9aecb86d-3099b76f33b05fa1cd45f2ff"><ac:plain-text-body><![CDATA[ | VOC_value_set_constructor | usedToBuildValueSet | new valueDomainEntry(parent = valueDomain[valueSetId=current()/.],id=unique()) | No notes |
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| ]]></ac:plain-text-body></ac:structured-macro> |
VOC_value_set_constructor | includesOrExcludesSet | valueDomainEntry.includesValueDomain | No notes |
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VOC_value_set_constructor | includeHeadCode | valueDomainEntry.isSelectable | No notes |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="6c53cd494dfc1dc9-a23416b1-49db456a-90459f4b-e85b592a48698660773ff569"><ac:plain-text-body><![CDATA[ | VOC_value_set_constructor |
| valueDomainEntry.conceptCode = VOC_code_reference[usedToBuildValueSet=current().usedToBuildValueSet and isHeadCode=true].referencesConceptCode | Assumes that there always is a head code. |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
VOC_vocabulary_domain_value_set | representsVocDomain | (selector) |
|
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c87f8652b8821c23-120e4bf2-45da40b9-b1059894-f83a4025d73fc4fa7000397e"><ac:plain-text-body><![CDATA[ | VOC_vocabulary_domain_value_set | definedByValueSet | codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].text | have to get 'representsVocDomain' into supportedProperty header |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="7e796a0190e8aa49-8b48b369-4cf244cc-b202bb0a-c12bad4e3df983bc23cd99f2"><ac:plain-text-body><![CDATA[ | VOC_vocabulary_domain_value_set | appliesInContext | codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].usageContext | Have to get all the contexts in the VocabularyDomain supportedContext header |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
VCS_release_version | releaseId | codingSchemeVersion.version | Note: this is not the way that things are done at the moment. At the moment, VCS_release_versions are loaded into systemRelease. Entered if one or more concept/relationship change. |
|
| ||
VCS_release_version |
| valueDomainVersion.version | Set iff one or more value sets change |
|
| ||
VCS_release_version | literal("false") | codingSchemeVersion.isComplete | All versions are delta's in this model |
|
| ||
VCS_release_version | releaseAgency | None | No notes |
|
| ||
VCS_release_version | releaseDate | codingSchemeVersion.versionDate | No notes |
|
| ||
VCS_release_version | valueDomainVersion.versionDate | None | No notes |
| |||
VCS_release_version | description | codingSchemeVersion.entityDescription | No notes |
|
| ||
VCS_release_version | valueDomainVersion.entityDescription | None | No notes |
| |||
VCS_release_version | editorID | None | There is no place for these currently. |
|
| ||
VCS_release_version | forWhomID | None | There is no place for these currently. |
|
| ||
VCS_release_version | concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) | None | This corresponds to the containing system release when the sytem release occurs. It is empty until then. |
|
|
LexGrid Text Mapping
The following table lists Source Definition column contents.
Source Definition | Column | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | Comments | ||
---|---|---|---|---|---|---|---|---|---|---|---|---|
Line | 1 | <codingSchemeName> | <codingSchemeId> | <defaultLanguage> | <formalName> | version |
| description | copyright | This must be the first line. It contains the coding scheme metadata. | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5f397c27e22479ac-26e99611-4e8f4ef5-a568a33b-1ef10c4cacf67c277d14eaa2"><ac:plain-text-body><![CDATA[ | Line | 2 | [<code>] | <name> | description | None | None | None | None | None | Beginning of concepts in coding scheme. | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5b8264344195842a-44521cff-4ec74e4a-95b6ba04-c315ecfda1c5836c57d41923"><ac:plain-text-body><![CDATA[ | Line | 3 | [<code>] | <name> | description | None | None | None | None | None | Represent hierarchical 'hasSubtype' relationship nesting (name hasSubtype name) | ]]></ac:plain-text-body></ac:structured-macro> |
The following table lists text elements for Coding Scheme.
Text Element | LexGrid | Comments |
---|---|---|
Coding Scheme | LexGrid | Comments |
codingSchemeName | codingScheme.codingSchemeName | None |
codingSchemeId | codingScheme.codingSchemeId | None |
defaultLanguage | codingScheme.defaultLanguage | None |
formalName | codingScheme.formalName | None |
version | codingScheme.representsVersion | Optional |
source | codingScheme.source | Optional |
description | codingScheme.entityDescription | Optional |
copyright | codingScheme.copyright | Optional |
Concepts | LexGrid | Comments |
code | concept.conceptCode | Optional |
name | concept.conceptName | None |
description | concept.entityDescription | None |
Scrollbar | ||
---|---|---|
|
...
An association between one class (domain) and one asscoication (domain and hasDataProperty). The conceptProperty defines the ra
concept.conceptProperty.text = "owl:intersectionOf
No comments
concept.presentation.propertyName (inherited from Propert
SRFLD
...