 |
...
OBO Class | OBO Entity | LexGrid Model Element | Notes | ||
|---|---|---|---|---|---|
Document Header | format-version | — | Not mapped | ||
Document Header | data-version | CodingScheme.representsVersion | Creates a codingSchemeVersion and SystemRelease record. If not specified, then hard coded "UNASSIGNED" | ||
Document Header | version | CodingScheme.representsVersion | Deprecated - use data-version if present. | ||
Document Header | date | — | Not mapped | ||
Document Header | saved-by | — | Ignored but included if contained in the remark entity. | ||
Document Header | auto-generated-by | — | Ignored but included if contained in the remark entity. | ||
Document Header | subsetdef | — | Not mapped. | ||
Document Header | import | — | Deprecated - Imports are used to assemble a larger document from smaller. | ||
Document Header | typeref | — | Deprecated. | ||
Document Header | synonymtypedef | — | Not mapped. | ||
Document Header | idspace | — | Not mapped.The idspace is a triple - localName, URN and description. | ||
Document Header | default-relationship-id-prefix | — | Not mapped. | ||
Document Header | id-mapping | CodingScheme.supportedAssociation | This is more generalized than the LexGrid model, as it supports mapping between any id's. Note that its primary purpose, however, is to handle supportedAssociation. | ||
Document Header | remark | CodingScheme.entityDescription | Will combine multiple remark entities into the entityDescription. | ||
Document Header | default-namespace | codingScheme.codingScheme | Will use default-namespace if provided; otherwise will use filename without the extension. | ||
Document Header | default-namespace | codingScheme.formalName | Will use default-namespace if provided; otherwise will use filename without the extension. | ||
HeaderDocument | default-namespace | codingScheme.registeredName | Combination of "urn:lsid:bioontology.org:" and if provided, the value in "default-namespace"; but if not will use filename without the extension. | ||
HeaderDocument | default-namespace | codingScheme.defaultLanguage | Hard coded "en" | ||
HeaderDocument | default-namespace | codingScheme.isNative | Hard coded "true" | ||
Stanza | id | CodedEntry.conceptCode | No notes | ||
Stanza | name | CodedEntry.entityDescription | No notes | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="7cac2248b83ae7d3-8eee6427-4efe4a18-ae80ac07-1c487844b5640cf1e715187a"><ac:plain-text-body><![CDATA[ | Stanza | name | CodedEntry.presentation['textualPresentation'].text | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="65a3b1cac43168c4-603f40f0-40784fdc-a9f9a0ff-bbf8fde8dd42861f2b3825a7"><ac:plain-text-body><![CDATA[ | Stanza | name | CodedEntry.presentation['textualPresentation'].isPreferred = true | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | alt_id | None | No notes | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="8cc3ec802ff0346c-42bf7d94-49094fb4-acb1b541-859d9763dc36102334811056"><ac:plain-text-body><![CDATA[ | Stanza | alt_id | CodedEntry.property['alt_id'].propertyId | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d22e0a06fba2220d-8792b355-45dc4822-914d85e2-1b97cf702cf50bf487c5aafe"><ac:plain-text-body><![CDATA[ | Stanza | alt_id | CodedEntry.property['alt_id'].text | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | is_anonymous | CodedEntry.isAnonymous = true | No notes | ||
Stanza | is_obsolete | CodedEntry.isActive = false | No notes | ||
Stanza | def | CodedEntry.definition | No notes | ||
Stanza | def | CodedEntry.definition.isPreferred = true | No notes | ||
Stanza | def.dbxref | — | See dbxref | ||
Stanza | comment | CodedEntry.comment.text | No notes | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="f713bc5daac211c3-a1c67bbb-44b64b47-9617b5a9-939227ef5babf08511164e6f"><ac:plain-text-body><![CDATA[ | Stanza | subset | property[subset tag] | See subsetdef | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a357d795fcb6a5d8-b7a8ce53-4c0e4757-ac0bb655-0dd2a340e39758d19245ac01"><ac:plain-text-body><![CDATA[ | Stanza | synonym | presentation['textualPresentation'].text | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e10c9ba9e59ef376-edd36f70-4910440a-a0f28908-a0b068c382a0fa402bb6a30f"><ac:plain-text-body><![CDATA[ | Stanza | synonym.scope | presentation['textualPresentation'].degreeOfFidelity | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5c9790f0b22370e4-892e0efe-43a64b0c-8ccc9f3d-9640786b0d591f7cacce0c7f"><ac:plain-text-body><![CDATA[ | Stanza | synonym.type | presentation['textualPresentation'].representationalForm | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | synonym.dbxref | --- — | See dbxref | ||
Stanza | exact_synonym | — | See synonym | ||
Stanza | narrow_synonym | — | See synonym | ||
Stanza | broad_synonym | — | See synonym | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="18a0198da48fc45e-3008ac23-4d894bca-906cbafd-8838c043c754c77134de08c9"><ac:plain-text-body><![CDATA[ | Stanza | xref | associations.['mapsTo'] | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | xref_analog | — | See synonym | ||
Stanza | xref_unk | None | No notes | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="87310302e0c150f6-9da4ad60-44454b77-949ea302-fdca98fb99450a7806aaf4d1"><ac:plain-text-body><![CDATA[ | Stanza | is_a | associations.['hasSubtype'] | Reverse of the source and target. | ]]></ac:plain-text-body></ac:structured-macro> |
Stanza | is_a.namespace | None | If present, the supplied namespace becomes the owning "codingScheme". | ||
Stanza | is_a.derived | associations.hasSubtype.associationQualifier | If present, need to include derived in the supportedAssociationQualifiers section | ||
Stanza | intersection_of | None | Processed the same way that OWL intersection operator is processed. This includes creation of anonymous sets. | ||
Stanza | union_of | — | Same as OWL | ||
Stanza | disjoint_from | — | Same as OWL | ||
Stanza | relationship | associations. | No notes | ||
Stanza | relationship.not_necessary | associations..associationQualifier | No notes | ||
Stanza | relationship.inverse_necessary | associations..associationQualifier | No notes | ||
Stanza | relationship.namespace | None | If present, the supplied namespace becomes the owning "codingScheme". | ||
Stanza | relationship.derived | associations..associationQualifier | No notes | ||
Stanza | relationship.cardinality | associations..associationQualifier | No notes | ||
Stanza | relationship.maxCardinality | associations..associationQualifier | No notes | ||
Stanza | relationship.minCardinality | associations..associationQualifier | No notes | ||
Stanza | is_obsolete | codedEntry.isActive = false | No notes | ||
Stanza | replaced_by | None | No notes | ||
Stanza | consider | — | Not mapped | ||
Stanza | use_term | — | Deprecated | ||
dbxref | dbxref name | CodedEntry..source | No notes | ||
dbxref | supportedSource | None | dbxref name format is inconsistent. In most cases, it can be the localName of supportedSource, but special processing may be necessary in the case of URL's, etc | ||
dbxref | dbxref description | — | Not mapped. | ||
dbxref | trailing modifiers | — | Not mapped. | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="06085ebd7ec3375c-f444ff26-48794928-89acb829-db9d7a00eed29d54acf36be5"><ac:plain-text-body><![CDATA[ | typeDef Stanza | domain | associations.['has_domain'] | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="41fff5b347dcf44c-a7e3b114-48a8470d-a95a86bf-2b5ab522f3bdbefc3f224ba9"><ac:plain-text-body><![CDATA[ | typeDef Stanza | range | associations.['has_range'] | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="7f77c424ae7728e3-e62e956b-47c74a8d-afad806a-f80a5764213130d85670795f"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_cyclic | property['is_cyclic'] | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="ac75bb96a4d0445a-80a848ea-44874b30-b946976c-1130ae460e9e1fbe0ca792f7"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_reflexive | property['is_reflexive'] | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
typeDef Stanza | is_reflexive |
| | association.isReflexive | No notes |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="6b3307b01944ce43-2d5cbdb9-4e67454e-b4108f87-2f676f52c69017cb3086aaac"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_symmetric | property['is_symmetric'] | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
typeDef Stanza | is_symmetric |
| | association.isSymmetric | No notes |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d60c2d0f36137286-acd4d0f4-40744448-a4d1bbe7-fe5a6906f92658327b0dc99e"><ac:plain-text-body><![CDATA[ | typeDef Stanza | is_transitive | property['is_transitive'] | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
typeDef Stanza | is_transitive |
| | association.isTransitive | No notes |
typeDef Stanza | inverse_of | association.inverse | No notes | ||
instance stanza | id | same rules as general stanza | Same rules as general stanza | ||
instance stanza | name | same rules as general stanza | Same rules as general stanza | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a8c18bbdd99bb1f4-cacdaf0a-42424c34-99dd8df9-653362d17de2052319b508f8"><ac:plain-text-body><![CDATA[ | instance stanza | instance_of | association['has_instance'] | No notes | ]]></ac:plain-text-body></ac:structured-macro> |
instance stanza | instance_of | CodedEntry.property.property="" | Data type properties go in Coded Entry property section |
...
HL7 Table | HL7 Column | LexGrid Model Element | Notes | Intentionally Not mapped | Outstanding issues | ||
|---|---|---|---|---|---|---|---|
Model | <modelID> | <codingSchemeName> | No notes |
|
| ||
Model | <name> | <formalName> | No notes |
|
| ||
Model | <registeredName> |
| No notes |
|
| ||
Model | <defaultLanguage> | en* | No notes |
|
| ||
Model | <versionNumber> | <representsVersion> | No notes |
|
| ||
Model | <isNative> | 0* | No notes |
|
| ||
Model | <approximateNumberofConcepts> | Result of count on concept bearing table? | No notes |
|
| ||
Model | <firstRelease> | MISSING | No notes |
|
| ||
Model | <modifiedRelease> | MISSING | No notes |
|
| ||
Model | <deprecated> | MISSING | No notes |
|
| ||
Model | <description> | <entityDescription> | No notes |
|
| ||
Model | <copyright> | MISSING | No notes |
|
| ||
VCS_code_system | codeSystemId | codingScheme.registeredName | Moved to metadata file. |
|
| ||
VCS_code_system | codeSystemType | commonTypes::Properties | This is an HL7 specific code system property to distinguish internal vs external code systems. Moved to metadata file. |
|
| ||
VCS_code_system | codeSystemName | concept.conceptCode | Moved to metadata file. |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="b782b36ee7db7711-479cc80b-4ebe4f97-a0b3a9fe-4248955e862f8844155b49a0"><ac:plain-text-body><![CDATA[ | VCS_code_system | codeSystemName | concept.presentation['textualPresentation'].text | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
VCS_code_system | fullName | codingScheme.formalName | No notes |
|
| ||
VCS_code_system |
| description | codingScheme.entityDescription | Moved to metadata file. |
|
| |
VCS_code_system | releaseId | codingScheme.representsVersion | Moved to metadata file. |
|
| ||
VCS_code_system | copyrightNotice | codingScheme.copyright | Moved to metadata file. |
|
| ||
VCS_code_system | literal('en') | codingScheme.defaultLanguage | Moved to metadata file. |
|
| ||
VCS_concept_code_xref | internalId | None | No notes |
|
| ||
VCS_concept_code_xref | Concept Code | concept.conceptCode | No notes | RIM db column conceptCode2 |
| ||
VCS_concept_code_xref | Case Difference | commonTypes::Properties | Basically a property to outline whether there are case differences in the Concept Code or not (mainly used, but not restricted tor units of measure) | RIM db column codeInstance |
| ||
VCS_concept_code_xref | Status | concept.isActive=(conceptStatus=='A'?) | No notes | RIM db column conceptStatus |
| ||
VCS_concept_code_xref |
| concept.conceptStatus | Not used by HL7. A = isActive, R = retired |
|
| ||
VCS_concept_designation | internalId |
| foreign key |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5975994eb1db4393-eaac1f59-4a2242ca-963ba6b4-5714fd2cc075c5eaeeb3cb68"><ac:plain-text-body><![CDATA[ | VCS_concept_designation | designation | concept.presentation['textualPresentation'].text | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
VCS_concept_designation | designationSeq |
| No notes |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="131b27eddde5b3ce-b789ee51-4bb14d76-b6aba294-118a6ff66c3d7c6544debb9a"><ac:plain-text-body><![CDATA[ | VCS_concept_designation | language | concept.presentation['textualPresentation'].language | Can be omitted if language = default language |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="2f8843b007e2de6d-74359de2-49a04943-a373b05f-558ce38cc31918f6d723d411"><ac:plain-text-body><![CDATA[ | VCS_concept_designation | preferredForLanguage | concept.presentation['textualPresentation'].isPreferred | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1ccc6f41d72072d3-950cdfb7-475b4cbf-bd10b69d-175eeae1c9dac56b863952bc"><ac:plain-text-body><![CDATA[ | VCS_concept_description | internalId | with(codeSystem[deref(internalId)].concept[deref(internalId)]).definition | foreign key |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0a56cd9683644219-f5f43363-4b504b41-88c9972f-d473b0b9a1ed78d3a9898e96"><ac:plain-text-body><![CDATA[ | VCS_concept_description | description | concept.presentation['textualPresentation'].text | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0047d896e2265b29-7256bc2a-42ef49e4-b4369985-3320b158f48ae4e4b9e56103"><ac:plain-text-body><![CDATA[ | VCS_concept_description | language | concept.presentation['textualPresentation'].language | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="88c9cb4339b2e0d4-9b4e28df-466047f8-bb23a359-4e9f5dc189147cc515e604ff"><ac:plain-text-body><![CDATA[ | VCS_concept_description | literal('true') | concept.presentation['textualPresentation'].isPreferred | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1dbf3ffb9bddc15d-f9e78df4-41a14284-8d988116-b44a48622ffeec8d3609adce"><ac:plain-text-body><![CDATA[ | VCS_concept_description | uniqueId() | concept.presentation['textualPresentation'].propertyId | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="4c4ceaa95536c649-19c30c0e-4257481b-83ad85d1-e49ffbb22ba3293671ae4108"><ac:plain-text-body><![CDATA[ | VCS_concept_description | literal('definition') | concept.presentation['textualPresentation'].property | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
VCS_concept_property | internalId | None | foreign key |
|
| ||
VCS_concept_property | propertyCode | concept.property.property | No notes |
|
| ||
VCS_concept_property | propertySeq | None | Currently not used by HL7 |
|
| ||
VCS_concept_property | propertyValue | concept.property.text | No notes |
|
| ||
VCS_concept_property | language | concept.property.language | No notes |
|
| ||
VCS_concept_relationship | relationCode | association.association | No notes |
|
| ||
VCS_concept_relationship | sourceInternalId | associationInstance.sourceConcept | No notes |
|
| ||
VCS_concept_relationship | targetInternalId | associationTarget.targetConcept | No notes |
|
| ||
Model | modelID | systemRelease.releaseId | No notes |
|
| ||
Model | name | service.service | No notes |
|
| ||
Model | versionNumber | service.version | No notes |
|
| ||
Model | lastModifiedDate | systemRelease.releaseDate | No notes |
|
| ||
Model | developingOrganization | systemRelease.releaseAgency | No notes |
|
| ||
Model | committeeID | Note | No notes |
|
| ||
Model | description | systemRelease.entityDescription | No notes |
|
| ||
Model | concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) | systemRelease.releaseURN | No notes |
|
| ||
Model | literal('true') | systemRelease.isLatest | Also have to set the prior release isLatest to false |
|
| ||
Model | preceding-sibling/releaseOrder + 1 | systemRelease.releaseOrder | No notes |
|
| ||
Model | modelID | commonTypes::Properties | No notes |
|
| ||
(Special mapping for NCI) | name | codingScheme.localName | No notes |
|
| ||
(Special mapping for NCI) | versionNumber | codingScheme.representsVersion | No notes |
|
| ||
(Special mapping for NCI) | lastModifiedDate | commonTypes::Properties | No notes |
|
| ||
(Special mapping for NCI) | developingOrganization | commonTypes::Properties | No notes |
|
| ||
(Special mapping for NCI) | committeeID | None | No notes |
|
| ||
(Special mapping for NCI) | description | codingScheme.entityDescription | No notes |
|
| ||
(Special mapping for NCI) | concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) | codingScheme.registeredName | No notes |
|
| ||
(Special mapping for NCI) | literal('true') | commonTypes::Properties | Also have to set the prior release isLatest to false |
|
| ||
(Special mapping for NCI) | preceding-sibling/releaseOrder + 1 | commonTypes::Properties | No notes |
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c781c4a5bd1c5ee2-0951ec0b-4aec4195-83b9b08a-f40434af3406094efac096ac"><ac:plain-text-body><![CDATA[ | RIM_vocabulary_domain | vocDomain | codingscheme["VocabularyDomain"].concept.conceptCode | Vocabulary Domains are carried in a code system of vocabulary domains. |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="3efb0509c2cd1c68-531c70bd-4bf44f4a-8aa7a13a-bcad8abb7e5967a2323eb542"><ac:plain-text-body><![CDATA[ | RIM_vocabulary_domain |
| codingscheme["VocabularyDomain"].concept.presentation["textualPresentation"].text | preferredPresentation |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="696033b57ef88a04-940238b8-468e4fb6-b1ed8a0e-835be7877097e16a0b1488fc"><ac:plain-text-body><![CDATA[ | RIM_vocabulary_domain | description | codingscheme["VocabularyDomain"].concept.definition.text | preferredDefinition for code |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="9f63c510275fd71b-3c412afb-4a3e494b-8fb88b02-8dc1e56eb365dde372e65eb6"><ac:plain-text-body><![CDATA[ | RIM_vocabulary_domain | restrictsDomain | codingscheme["VocabularyDomain"].association["hasSubtype"].sourceConcept | Should this be hasSubtype or something else? |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1cda9235c83b69ee-233cb3cc-49e443ae-903989a1-d143e78d49345ebb2d3724f4"><ac:plain-text-body><![CDATA[ | RIM_vocabulary_domain |
| codingscheme["VocabularyDomain"].association["hasSubtype"].targetconcept = vocDomain | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="8f8f852d190cad7c-ca65e9df-4db94519-98f3ac91-c6cf006888d5072ea7b40c46"><ac:plain-text-body><![CDATA[ | VOC_code_reference | usedToBuildValueSet | with(valueDomain[registeredName=current()/.]) | No notes |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
VOC_code_reference | referencesConceptCode | ...valueDomainEntry/conceptCode | 1) id is synthesized |
|
| ||
VOC_code_reference | referencesInternalId | None | Internal id's aren't exposed in lexGrid |
|
| ||
VOC_code_reference | relationship | ...valueDomainEntry/includeChildren = (relationship == 'hasSubtype') | Won't deal w/ non-hasSubtype relationships, but HL7 doesn't have any. |
|
| ||
VOC_code_reference | includeReferencedCode | ...valueDomainEntry/isSelectable | No notes | Not in current implementation |
| ||
VOC_code_reference | leafOnly | None | Not used in HL7 Model |
|
| ||
VOC_code_reference | directChildrenOnly | None | Not used in HL7 Model |
|
| ||
VOC_code_reference | isHeadCode | None | Only used when referenced in VOC_value_set_constructor. |
|
| ||
VOC_code_reference | referencesCodeSystem | .../valueDomainEntry.codingScheme | Shortcut in HL7 model. Must = VOC_value_set.basedOnCodeSystem |
|
| ||
VOC_code_reference | arbitraryUniqueValue() | .../valueDomainEntry.id | Notes |
|
| ||
VOC_registered_code_system | codeSystemId | None | VOC_registered_code_system isn't currently transferred to Lexgrid |
|
| ||
VOC_registered_code_system |
| sponsor | None | No notes |
|
| |
VOC_registered_code_system | publisher | None | No notes |
|
| ||
VOC_registered_code_system | versionReportingMethod | None | No notes |
|
| ||
VOC_registered_code_system | licensingInformation | None | This field should really be transfer to copyright? |
|
| ||
VOC_registered_code_system | inUMLS | None | No notes |
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VOC_registered_code_system | systemSpecificLocatorInfo | None | No notes |
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VOC_registered_code_system | uri | None | No notes |
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VOC_registered_code_system | isExternal | None | No notes |
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VOC_value_set | valueSetId | valueDomain.registeredName | No notes |
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VOC_value_set | valueSetName | valueDomain.valueDomain | Name is the key in LexGrid, and is optional in HL7 - will need to be addressed. |
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VOC_value_set | basedOnCodeSystem | valueDomain.defaultCodingScheme | Optional in HL7, required in LexGrid. |
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VOC_value_set | description | valueDomain.entityDescription | No notes |
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VOC_value_set | definingExpression | None | Not used. |
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VOC_value_set | allCodes | None | No notes |
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VOC_value_set | isTaxonomicSet | None | No mapping available |
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VOC_value_set | valueSetAuthority | None | Included in valueSetID |
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VOC_value_set | valueSetNumber | None | No notes |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="3a32e1e114fd96ee-367b6aaa-4ceb41d6-85b48525-63d45321d35cca75f996fc42"><ac:plain-text-body><![CDATA[ | VOC_value_set_constructor | usedToBuildValueSet | new valueDomainEntry(parent = valueDomain[valueSetId=current()/.],id=unique()) | No notes |
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| ]]></ac:plain-text-body></ac:structured-macro> |
VOC_value_set_constructor | includesOrExcludesSet | valueDomainEntry.includesValueDomain | No notes |
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VOC_value_set_constructor | includeHeadCode | valueDomainEntry.isSelectable | No notes |
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<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="4e15a384833542e8-c1b81b5f-46054423-8874a083-44eab77c73652909efb8f233"><ac:plain-text-body><![CDATA[ | VOC_value_set_constructor |
| valueDomainEntry.conceptCode = VOC_code_reference[usedToBuildValueSet=current().usedToBuildValueSet and isHeadCode=true].referencesConceptCode | Assumes that there always is a head code. |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
VOC_vocabulary_domain_value_set | representsVocDomain | (selector) |
|
|
| ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="9e1bd81e79e89204-d01a257e-4a734133-84679013-2ce678266bd754453a153ec0"><ac:plain-text-body><![CDATA[ | VOC_vocabulary_domain_value_set | definedByValueSet | codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].text | have to get 'representsVocDomain' into supportedProperty header |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="28f6802777e4c639-1093102b-4faf4c0c-99c49a63-2cc85b43f904936ecb67efc2"><ac:plain-text-body><![CDATA[ | VOC_vocabulary_domain_value_set | appliesInContext | codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].usageContext | Have to get all the contexts in the VocabularyDomain supportedContext header |
|
| ]]></ac:plain-text-body></ac:structured-macro> |
VCS_release_version | releaseId | codingSchemeVersion.version | Note: this is not the way that things are done at the moment. At the moment, VCS_release_versions are loaded into systemRelease. Entered if one or more concept/relationship change. |
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| ||
VCS_release_version |
| valueDomainVersion.version | Set iff one or more value sets change |
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VCS_release_version | literal("false") | codingSchemeVersion.isComplete | All versions are delta's in this model |
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VCS_release_version | releaseAgency | None | No notes |
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VCS_release_version | releaseDate | codingSchemeVersion.versionDate | No notes |
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| ||
VCS_release_version | valueDomainVersion.versionDate | None | No notes |
| |||
VCS_release_version | description | codingSchemeVersion.entityDescription | No notes |
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VCS_release_version | valueDomainVersion.entityDescription | None | No notes |
| |||
VCS_release_version | editorID | None | There is no place for these currently. |
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VCS_release_version | forWhomID | None | There is no place for these currently. |
|
| ||
VCS_release_version | concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId) | None | This corresponds to the containing system release when the sytem release occurs. It is empty until then. |
|
|
The following table lists Source Definition column contents.
Source Definition | Column | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | Comments | ||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
Line | 1 | <codingSchemeName> | <codingSchemeId> | <defaultLanguage> | <formalName> | version |
| description | copyright | This must be the first line. It contains the coding scheme metadata. | ||
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="3875a98377c59786-237e6d99-47e64726-bd57840c-12e86bd87da9e553d370274a"><ac:plain-text-body><![CDATA[ | Line | 2 | [<code>] | <name> | description | None | None | None | None | None | Beginning of concepts in coding scheme. | ]]></ac:plain-text-body></ac:structured-macro> |
<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0e6af0283f87a1e6-84781948-41304bcb-8c32afce-2fc82cfbddaf340da9b2b0d8"><ac:plain-text-body><![CDATA[ | Line | 3 | [<code>] | <name> | description | None | None | None | None | None | Represent hierarchical 'hasSubtype' relationship nesting (name hasSubtype name) | ]]></ac:plain-text-body></ac:structured-macro> |
The following table lists text elements for Coding Scheme.
Text Element | LexGrid | Comments |
|---|---|---|
Coding Scheme | LexGrid | Comments |
codingSchemeName | codingScheme.codingSchemeName | None |
codingSchemeId | codingScheme.codingSchemeId | None |
defaultLanguage | codingScheme.defaultLanguage | None |
formalName | codingScheme.formalName | None |
version | codingScheme.representsVersion | Optional |
source | codingScheme.source | Optional |
description | codingScheme.entityDescription | Optional |
copyright | codingScheme.copyright | Optional |
Concepts | LexGrid | Comments |
code | concept.conceptCode | Optional |
name | concept.conceptName | None |
description | concept.entityDescription | None |
| Scrollbar | ||
|---|---|---|
|
...
An association between one class (domain) and one asscoication (domain and hasDataProperty). The conceptProperty defines the ra
concept.conceptProperty.text = "owl:intersectionOf
No comments
concept.presentation.propertyName (inherited from Propert
SRFLD
...
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