Page History

owl:Restriction

concept

Anonymous concept created.

owl:Restriction

concept.entityDescription = "RestrictionOn: " + association name

Concatination of "Restriction On: " and assocation name

owl:Restriction

concept.isAnonymous = true

No comments

owl: allValuesFrom

associationQualification.association.Qualifier = "AllValuesFrom"

No comments

owl: someValuesFrom

associationQualification.association.Qualifier = "someValuesFrom"

No comments

owl:intersectionOf

concept.entityDescription

Concatination of "Restriction On: " and assocation name

owl:intersectionOf

concept.isAnonymous = true

No comments

owl:intersectionOf

concept.presentation.propertyId

Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.

owl:intersectionOf

concept.presentation.propertyName

Hardcoded "textualPresentation"

owl:intersectionOf

concept.presentation.isPreferred = true

Hardcoded "true"

owl:intersectionOf

concept.presentation.text

Set to concept.entityDescription

owl:intersectionOf

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

owl:intersectionOf

concept.conceptProperty.propertyName = type

Hardcoded "type"

owl:intersectionOf

concept.conceptProperty.text = "owl:intersectionOf"

No comments

owl:unionOf

concept.entityDescription

Concatination of "Restriction On: " and assocation name

owl:unionOf

concept.isAnonymous = true

No comments

owl:unionOf

concept.presentation.propertyId

Generated value for property textual presentation using "P" concatenated with a steadily incremented numerical value.

owl:unionOf

concept.presentation.propertyName

Hardcoded "textualPresentation"

owl:unionOf

concept.presentation.isPreferred = true

Hardcoded "true"

owl:unionOf

concept.presentation.text

Set to concept.entityDescription

owl:unionOf

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

owl:unionOf

concept.conceptProperty.propertyName = type

Hardcoded "type"

owl:unionOf

concept.conceptProperty.text = "owl:unionOf"

  No comments

owl:oneOf

concept.conceptProperty.propertyId

Generated value for property using "P" concatenated with a steadily incremented numerical value.

owl:oneOf

concept.conceptProperty.propertyName = "owl:oneOf"

Hardcoded "owl:oneOf"

owl:oneOf

concept.conceptProperty.text

String of oneOf values

go-term

x

NA

NA

NA NA

None

propertyValue None

No comments

go-id

NA

NA

NA

x

propertyQualifierId

val1

PropertyQualifier attribute content?

go-source

NA

NA

NA

x

propertyQualifierId

val1

PropertyQualifier attribute content?

source-date

NA

NA

NA

x

propertyQualifierId

val1

PropertyQualifier attribute content?

term-name

x

NA

NA

NA NA

None

propertyValue None

No comments

term-group

NA

NA

x

NA NA

None

representationalForm

property attribute

term-source

NA

x

NA

NA NA

None

attributeValue

source

def-source

NA

x

NA

NA NA

None

attributeValue

source

def-definition

x

NA

NA

NA NA

None

propertyValue

definition

Definition_Review_Date

NA

NA

NA

x

propertyQualifierId

val1

PropertyQualifier attribute content?

Definition_Reviewer_Name

NA

NA

NA

x

propertyQualifierId

val1

PropertyQualifier attribute content?

MRSAB.RRF

SVER

Release date or version number of a source

NA

codingScheme.representsVersion

No comments

MRSAB.RRF

SSN

Source short name

NA

codingScheme.codingScheme

No comments

MRSAB.RRF

SON

Source Official Name

NA

codingScheme.formalName

No comments

MRSAB.RRF

LAT

Language of Term(s)

NA

codingScheme.defaultLanguage

No comments

MRSAB.RRF

TRF

Term frequency for a source

None

codingScheme.approxNumConcepts

No comments

MRSAB.RRF

SCIT

Source citation

NA

codingScheme.entityDescription

inherits entityDescription from versionableAndDescribable

MRSAB.RRF

SCC

Content contact info for a source

NA

codingScheme.copyright

No comments

MRSAB.RRF

SCC

None

NA

codingScheme.registeredName

Pulled from iso mapping configuration file using method getISOString(RSAB from MRSAB.RRF)

MRDOC.RRF

EXPL

Detailed explanation

x

codingScheme.representsVersion

Where Dockey = "RELEASE" and value = "umls.release.name"

MRDOC.RRF

EXPL

None

x

codingScheme.codingScheme

Hard coded in java file as "NCI MetaThesaurus"

MRDOC.RRF

EXPL

None

x

codingScheme.formalName

Hard coded in java file as "NCI MetaThesaurus"

MRDOC.RRF

EXPL

None

x

codingScheme.defaultLanguage

Hard coded in java file as "ENG"

MRCONSO.RRF

None

None

x

codingScheme.approxNumConcepts

Count of CODE value in MRCONSO.RRF

MRCONSO.RRF

None

None

x

codingScheme.entityDescription

Hard coded in java file as "NCI MetaThesaurus loaded from RRF files."

MRCONSO.RRF

None

None

x

codingScheme.copyright

Hard coded in java file as "Some material in the NCI Metathesaurus is from copyrighted sources of the respective copyright claimants. All sources appearing in the NCI Metathesaurus are licensed or authorized for NCI use. Users of the NCI Metathesaurus are responsible for compliance with the terms of these licenses and with any copyright restrictions and are referred to NCI Center of Bioinformatics for license terms and to the copyright notices appearing in the original sources, all of which are obtainable online by reference at http://ncimeta.nci.nih.gov/."

MRCONSO.RRF

None

None

NA

codingScheme.localNameList

Hard coded as constant in java file as "localName"

MRSAB.RRF

SON

Source Official Name

NA

codingScheme.localNameList.

No comments

MRSAB.RRF

SON

Source Official Name

NA

codingScheme.localNameList

Hard coded as constant in java file as "localName"

MRSAB.RRF

SON

Source Official Name

NA

codingScheme.localNameList.

Pulled from iso mapping configuration file using method getISOString(RSAB from MRSAB.RRF)

MRSAB.RRF

SON

Source Official Name

NA

codingScheme.source

Hard coded as constant in java file as "source"

MRDOC.RRF

EXPL

Detailed explanation

NA

codingScheme.source.content

String concatenation of "UMLS-" and value of EXPL

MRDOC.RRF

EXPL

Detailed explanation

x

codingScheme.localNameList

Hard coded as constant in java file as "localName"

MRDOC.RRF

EXPL

Detailed explanation

x

codingScheme.localNameList.

Hard coded in java file as "NCI Thesaurus"

MRDOC.RRF

EXPL

Detailed explanation

x

codingScheme.localNameList

Hard coded as constant in java file as "localName"

MRDOC.RRF

EXPL

Detailed explanation

x

codingScheme.localNameList.

Hard coded in java file as "NCI_Thesaurus"

MRDOC.RRF

EXPL

Detailed explanation

x

codingScheme.localNameList

Hard coded as constant in java file as "localName"

MRDOC.RRF

EXPL

Detailed explanation

x

codingScheme.localNameList.

Hard coded in java file as "10001"

MRDOC.RRF

EXPL

Detailed explanation

x

codingScheme.localNameList

Hard coded as constant in java file as "source"

MRDOC.RRF

EXPL

Detailed explanation

x

codingScheme.localNameList.

Hard coded in java file as "RRF Files"

MRDOC.RRF

EXPL

Detailed explanation

x

mappings.supportedFormat

Hard coded as constant in java file as "Format"

MRDOC.RRF

EXPL

Detailed explanation

x

mappings.supportedFormat.localId

Hard coded as one of several constants in a java file

MRDOC.RRF

EXPL

Detailed explanation

x

mappings.supportedAssociation

Hard coded as constant in java file as "Association"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedAssociation.localId

None

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedContext

Hard coded as constant in java file as "Context" May not be used in individual RRF load

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedSource

Hard coded as constant in java file as "Source" May not be used in individual RRF load

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedHierarchy

Hard coded as constant in java file as "Hierarchy"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedAssociationQualifier

Hard coded as constant in java file as "AssociationQualifier"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedProperty

Hard coded as constant in java file as "Property"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedLanguage

Hard coded as constant in java file as "Language"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedCodingScheme

Hard coded as constant in java file as "CodingScheme"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedRepresentationalForm

Hard coded as constant in java file as "RepresentationalForm"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedConceptStatus

Hard coded as constant in java file as "ConceptStatus"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedPropertyLink

Hard coded as constant in java file as "PropertyLink"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedPropertyQualifier

Hard coded as constant in java file as "PropertyQualifier"

MRREL.RRF

REL, RELA

Relationship, Relationship attribute

NA

mappings.supportedDataType

Hard coded as constant in java file as "DataType"

RSAB.RRF

SVER

Release date or version number of a source

codingScheme.representsVersion

No comments  

RSAB.RRF

SSN

Source short name

codingScheme.codingScheme?

No comments  

RSAB.RRF

SON

Source Official Name

codingScheme.formalName

No comments

RSAB.RRF

SON

Hard coded to "en"

codingScheme.defaultLanguage

No comments  

MRSAT.RRF

ATV

None  

concept.presentation.language

Unique to snomed.

Document Header

format-version

None  

Not mapped .

Document Header

data-version

CodingScheme.representsVersion

Creates a codingSchemeVersion and SystemRelease record. If not specified, then hard coded "UNASSIGNED"

Document Header

version

CodingScheme.representsVersion

Deprecated - use data-version if present.

Document Header

date

None  

Not mapped .

Document Header

saved-by

None  

Ignored but included if contained in the remark entity.

Document Header

auto-generated-by

None  

Ignored but included if contained in the remark entity.

Document Header

subsetdef

None  

Not mapped .

Document Header

import

None  

Deprecated - Imports are used to assemble a larger document from smaller.

Document Header

typeref

None  

Deprecated .

Document Header

synonymtypedef

None  

Not mapped .

Document Header

idspace

None  

Not mapped.The idspace is a triple - localName, URN and description.

Document Header

default-relationship-id-prefix

None  

Not mapped .

Document Header

id-mapping

CodingScheme.supportedAssociation

This is more generalized than the LexGrid model, as it supports mapping between *any* id's. Note that its primary purpose, however, is to handle supportedAssociation.

Document Header

remark

CodingScheme.entityDescription

Will combine multiple remark entities into the entityDescription.

Document Header

default-namespace

codingScheme.codingScheme

Will use default-namespace if provided; otherwise will use filename without the extension.

Document Header

default-namespace

codingScheme.formalName

Will use default-namespace if provided; otherwise will use filename without the extension.

Document Header

default-namespace

codingScheme.registeredName

Combination of "urn:lsid:bioontology.org:" and if provided, the value in "default-namespace"; but if not will use filename without the extension.

Document Header

default-namespace

codingScheme.defaultLanguage

Hardcoded "en"

Document Header

default-namespace

codingScheme.isNative

Hardcoded "true"

Stanza

id

CodedEntry.conceptCode

No comments  

Stanza

name

CodedEntry.entityDescription

No comments  

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="2065e46593392bf5-3c46e7e3-473a4ae0-8e518789-33203ab89472b22dff9557cc"><ac:plain-text-body><![CDATA[

  Stanza  

name

CodedEntry.presentation['textualPresentation'].text

  No comments

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5b3e5b39c2822a76-8741dc99-4de44386-8afeb689-7106d7cf3f084c9d3c11d9c0"><ac:plain-text-body><![CDATA[

  Stanza  

name

CodedEntry.presentation['textualPresentation'].isPreferred = true

  No comments

]]></ac:plain-text-body></ac:structured-macro>

Stanza

alt_id

CodedEntry.property.property="alt_id"

  No comments

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="0a2097ea25f51072-8f811bda-4c534855-83b59569-1bdf17c3aca4fb948af4c671"><ac:plain-text-body><![CDATA[

  Stanza  

alt_id

CodedEntry.property['alt_id'].propertyId

  No comments

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a93a6b4c1cebe038-c4041e5d-4083486b-970786e6-99a4c3088b69a9ee23c8e34c"><ac:plain-text-body><![CDATA[

  Stanza  

alt_id

CodedEntry.property['alt_id'].text

  No comments

]]></ac:plain-text-body></ac:structured-macro>

Stanza

is_anonymous

CodedEntry.isAnonymous = true

  No comments

Stanza

is_obsolete

CodedEntry.isActive = false

  No comments

Stanza

def

CodedEntry.definition

  No comments  

Stanza

def 

CodedEntry.definition.isPreferred = true

  No comments

Stanza

def.dbxref

None 

See dbxref

Stanza

comment

CodedEntry.comment.text

  No comments

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="29be58b1010f809d-82e6eae3-45154998-a770b153-839dfd4f3a675bc85e35ffac"><ac:plain-text-body><![CDATA[

Stanza

subset

property[subset tag]

See subsetdef

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1704a13b27f9a388-0336501d-4a0848c9-825892f0-8678ceb78996aafe100e569f"><ac:plain-text-body><![CDATA[

Stanza

syonym

presentation['textualPresentation'].text

  No comments

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="529e2e46f5a76cdc-ece5837e-4dce4cfe-aa358324-b05beacc8b9d97d8b56ba9ec"><ac:plain-text-body><![CDATA[

Stanza

synonym.scope

presentation['textualPresentation'].degreeOfFidelity

  No comments

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="157a6939462bbf3e-67478953-40864150-9f369e8d-d6e2d0095a41d2374df10ee7"><ac:plain-text-body><![CDATA[

Stanza

synonym.type

presentation['textualPresentation'].representationalForm

  No comments

]]></ac:plain-text-body></ac:structured-macro>

Stanza

synonym.dbxref

(see See dbxref )

  No comments

Stanza

exact_synonym

--- 

See synonym

Stanza

narrow_synonym

—  

See synonym

Stanza

broad_synonym

  —

See synonym

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="fe21566cc314e4e6-5e4dc8df-422043cb-a9a0b2c2-4da7fcd1132fa3a46016fc84"><ac:plain-text-body><![CDATA[

Stanza

xref

associations.['mapsTo']

  No comments

]]></ac:plain-text-body></ac:structured-macro>

Stanza

xref_analog

  —

See synonym

Stanza

xref_unk

None 
 

No comments

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="25f9f7c401aa9e98-62f24724-410e4def-84dd9226-97d9c7f1120c0b8029685bf8"><ac:plain-text-body><![CDATA[

Stanza

is_a

associations.['hasSubtype']

Reverse of the source and target.

]]></ac:plain-text-body></ac:structured-macro>

Stanza

is_a.namespace

None 

If present, the supplied namespace becomes the owning "codingScheme".

Stanza

is_a.derived

associations.hasSubtype.associationQualifier

If present, need to include derived in the supportedAssociationQualifiers section

Stanza

intersection_of

None 

Processed the same way that OWL intersection operator is processed. This includes creation of anonymous sets.

Stanza

union_of

  —

Same as OWL

Stanza

disjoint_from

  —

Same as OWL

Stanza

relationship

associations.

  No comments

Stanza

relationship.not_necessary

associations..associationQualifier

  No comments

Stanza

relationship.inverse_necessary

associations..associationQualifier

  No comments

Stanza

relationship.namespace

None  

If present, the supplied namespace becomes the owning "codingScheme".

Stanza

relationship.derived

associations..associationQualifier

  No comments

Stanza

relationship.cardinality

associations..associationQualifier

  No comments

Stanza

relationship.maxCardinality

associations..associationQualifier

  No comments

Stanza

relationship.minCardinality

associations..associationQualifier

  No comments

Stanza

is_obsolete

codedEntry.isActive = false

  No comments  

Stanza
 

is_obsolete

codedEntry.conceptStatus="is_obsolete"

  No comments

Stanza

replaced_by

None 
 

No comments

Stanza

consider

  —

Not Mapped mapped

Stanza

use_term

  —

(deprecated) Deprecated

dbxref

dbxref name

CodedEntry..source

  No comments  

dbxref 
 

dbxref name 

supportedSource

dbxref name format is inconsistent. In most cases, it can be the localName of supportedSource, but special processing may be necessary in the case of URL's, etc

dbxref

dbxref description

  —

Not mapped .

dbxref

trailing modifiers

  —

Not mapped .

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="6921722c93b4179c-491e611e-41f34620-a442b3c1-71fdce44507e2f6ff778d141"><ac:plain-text-body><![CDATA[

typeDef Stanza

domain

associations.['has_domain']

  No comments

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="4c368cae3a1811af-01d3a207-4322446e-bdea8e9f-fb37a278c618605b9bdd22ae"><ac:plain-text-body><![CDATA[

typeDef Stanza

range

associations.['has_range']

  No comments

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e5cec9f84cd65bcb-1acf356a-445c4340-b21d9829-1be73bd356200f938c7ad356"><ac:plain-text-body><![CDATA[

typeDef Stanza

is_cyclic

property['is_cyclic']

  No comments

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a7ed5df6ffbe9d02-67583c80-4940449b-b3879eea-b0e19eccba1ff8cba36ff22b"><ac:plain-text-body><![CDATA[

typeDef Stanza

is_reflexive

property['is_reflexive']

  No comments

]]></ac:plain-text-body></ac:structured-macro>

typeDef Stanza 

is_reflexive

association.isReflexive

  No comments

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="c4bbb7848bc5daf1-99c996ba-43cc462d-8c8995f1-b0f56548077eab3f1412dfc3"><ac:plain-text-body><![CDATA[

typeDef Stanza

is_symmetric

property['is_symmetric']

  No comments

]]></ac:plain-text-body></ac:structured-macro>

typeDef Stanza 

is_symmetric 

association.isSymmetric

  No comments

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="9519fe9d066c2d0e-e7dfe61c-48b54f11-bbec9ae8-a5177daf50458affab453f81"><ac:plain-text-body><![CDATA[

typeDef Stanza

is_transitive

property['is_transitive']

  No comments

]]></ac:plain-text-body></ac:structured-macro>

typeDef Stanza

is_transitive

association.isTransitive

  No comments

typeDef Stanza

inverse_of

association.inverse

  No comments

instance stanza

id

same rules as general stanza same

Same rules as general stanza

instance stanza

name

same rules as general stanza same

Same rules as general stanza

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="015c0dfd4f42047e-e03ccd40-47a7456b-8427a427-24329e510646e43dea4ed8b0"><ac:plain-text-body><![CDATA[

instance stanza

instance_of

association['has_instance']

  No comments

]]></ac:plain-text-body></ac:structured-macro>

instance stanza  

instance_of

CodedEntry.property.property=""

data Data type properties go in Coded Entry property section

Model

<modelID>

<codingSchemeName>

<name>

<formalName>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="424739631fea13a4-8bab280a-40514855-913d9d2c-a3a49a793d376effd778d9f4"><ac:plain-text-body><![CDATA[

<registeredName>

[http://www.hl7.org/Library/data-model/RIM

http://www.hl7.org/Library/data-model/RIM] *[1]

]]></ac:plain-text-body></ac:structured-macro>

<defaultLanguage>

en*

<versionNumber>

<representsVersion>

<isNative>

0*

<approximateNumberofConcepts>

Result of count on concept bearing table?

<firstRelease>

MISSING

<modifiedRelease>

MISSING

<deprecated>

MISSING

<description>

<entityDescription>

<copyright>

MISSING

VCS_code_system

codeSystemId

codingScheme.registeredName

Moved to metadata file.

codeSystemType

commonTypes::Properties

This is an HL7 specific code system property to distinguish internal vs external code systems. Moved to metadata file.

codeSystemName

concept.conceptCode

Moved to metadata file.

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="269e911e2b2c68fd-dd618ca1-46f842ac-9538b2fc-640a33897201b00f75116f3f"><ac:plain-text-body><![CDATA[

codeSystemName

concept.presentation['textualPresentation'].text

]]></ac:plain-text-body></ac:structured-macro>

fullName

codingScheme.formalName

description

codingScheme.entityDescription

Moved to metadata file.

releaseId

codingScheme.representsVersion

Moved to metadata file.

copyrightNotice

codingScheme.copyright

Moved to metadata file.

literal('en')

codingScheme.defaultLanguage

Moved to metadata file.

VCS_concept_code_xref

internalId

Concept Code

concept.conceptCode

RIM db column conceptCode2

Case Difference

commonTypes::Properties

Basically a proprty to outline whether there are case differences in the Concept Code or not (mainly used, but not restricted tor units of measure)

RIM db column codeInstance

Status

concept.isActive=(conceptStatus=='A'?)

RIM db column conceptStatus

concept.conceptStatus

Not used by HL7. A = isActive, R = retired

VCS_concept_designation

internalId

foreign key

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="914bc9089a28916e-7d767892-47524cff-b5e3bcf4-3cd3ec1b78cd03c4cdd28112"><ac:plain-text-body><![CDATA[

designation

concept.presentation['textualPresentation'].text

]]></ac:plain-text-body></ac:structured-macro>

designationSeq

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d1faf5e19d6d9031-5b528297-48224277-9807a000-56e6a23be704fccc4464968b"><ac:plain-text-body><![CDATA[

language

concept.presentation['textualPresentation'].language

Can be omitted if language = default language

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1bc49a8ccfcc19fa-512e9bd5-4bf94b27-a57c9643-742cb0ec71bfa563d060b465"><ac:plain-text-body><![CDATA[

preferredForLanguage

concept.presentation['textualPresentation'].isPreferred

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="1dc768f61a60bd90-9a8341ff-4f9641bd-bd118e66-ecade8e98bae4aafd323f0d7"><ac:plain-text-body><![CDATA[

VCS_concept_description

internalId

with(codeSystem[deref(internalId)].concept[deref(internalId)]).definition

foreign key

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="21ef38f122c43b6a-8b9b9163-4ebd4203-b9b7bf2f-d209f17bd1c38fb50093c0f0"><ac:plain-text-body><![CDATA[

description

concept.presentation['textualPresentation'].text

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="e3bff9151d2af543-a029b8ea-4aea4e4f-aa188259-f548d98577d89b14eb76473d"><ac:plain-text-body><![CDATA[

language

concept.presentation['textualPresentation'].language

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="78989f4b48463143-296f01f0-4b9146e1-a6c9baee-1fd013814344f739764872ee"><ac:plain-text-body><![CDATA[

literal('true')

concept.presentation['textualPresentation'].isPreferred

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="552fa48df182f4cf-b65dbd32-42a34931-b57b954b-a55b57958991d81d41f24c25"><ac:plain-text-body><![CDATA[

uniqueId()

concept.presentation['textualPresentation'].propertyId

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="645a0ec6033daec4-ba57c649-4b3e4eab-8b878e59-6ee4742491fc5c17df54530d"><ac:plain-text-body><![CDATA[

literal('definition')

concept.presentation['textualPresentation'].property

]]></ac:plain-text-body></ac:structured-macro>

VCS_concept_property

internalId

foreign key

propertyCode

concept.property.property

propertySeq

Currently not used by HL7

propartyValue

concept.property.text

language

concept.property.language

VCS_concept_relationship

relationCode

association.association

sourceInternalId

associationInstance.sourceConcept

targetInternalId

associationTarget.targetConcept

Model

modelID

systemRelease.releaseId

name

service.service

versionNumber

service.version

lastModifiedDate

systemRelease.releaseDate

developingOrganization

systemRelease.releaseAgency

committeeID

description

systemRelease.entityDescription

concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId)

systemRelease.releaseURN

literal('true')

systemRelease.isLatest

Also have to set the prior release isLatest to false

preceding-sibling/releaseOrder + 1

systemRelease.releaseOrder

Model

modelID

commonTypes::Properties

(Special mapping for NCI)

name

codingScheme.localName

versionNumber

codingScheme.representsVersion

lastModifiedDate

commonTypes::Properties

developingOrganization

commonTypes::Properties

committeeID

description

codingScheme.entityDescription

concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId)

codingScheme.registeredName

literal('true')

commonTypes::Properties

Also have to set the prior release isLatest to false

preceding-sibling/releaseOrder + 1

commonTypes::Properties

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="7b7c13e0d8305432-2da6f2d7-4586455a-93c28d76-fa190ef4bf398f115d7c871e"><ac:plain-text-body><![CDATA[

RIM_vocabulary_domain

vocDomain

codingscheme["VocabularyDomain"].concept.conceptCode

Vocabulary Domains are carried in a code system of vocabulary domains.

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="beadd2a0a0a2e5fc-2a86bf69-44d94336-88bbbe86-5f3f0181ac02a37497fc0d2c"><ac:plain-text-body><![CDATA[

codingscheme["VocabularyDomain"].concept.presentation["textualPresentation"].text

preferredPresentation

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="b62ce9012c5169f3-02f086de-413c40c8-ba8c9331-b37b836e6d2379ba49b2c476"><ac:plain-text-body><![CDATA[

description

codingscheme["VocabularyDomain"].concept.definition.text

preferredDefinition for code

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5d5fb817488bee1d-3c69b35d-4fc74284-b9c8a3ef-5cb1e12b0930f0689149204e"><ac:plain-text-body><![CDATA[

restrictsDomain

codingscheme["VocabularyDomain"].association["hasSubtype"].sourceConcept

Should this be hasSubtype or something else?

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="d01cba49f7f516e1-4d81a17b-44a746a8-aa63af2e-214cb3e7f56d70cb99449521"><ac:plain-text-body><![CDATA[

codingscheme["VocabularyDomain"].association["hasSubtype"].targetconcept = vocDomain

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="efe77d9d3f271fd8-f908c257-41b44dbc-9386922a-b4b57de413a71adadbe7e80b"><ac:plain-text-body><![CDATA[

VOC_code_reference

usedToBuildValueSet

with(valueDomain[registeredName=current()/.])

]]></ac:plain-text-body></ac:structured-macro>

referencesConceptCode

...valueDomainEntry/conceptCode

1) id is synthesized
2) Only stored if isHeadCode == false or includeReferencedCode == true

referencesInternalId

Internal id's aren't exposed in lexGrid

relationship

...valueDomainEntry/includeChildren = (relationship == 'hasSubtype')

Won't deal w/ non-hasSubtype relationships, but HL7 doesn't have any.

includeReferencedCode

...valueDomainEntry/isSelectable

Not in current implementation

leafOnly

Not used in HL7 Model

directChildrenOnly

Not used in HL7 Model

isHeadCode

Only used when referenced in VOC_value_set_constructor.

referencesCodeSystem

.../valueDomainEntry.codingScheme

Shortcut in HL7 model. Must = VOC_value_set.basedOnCodeSystem

arbitraryUniqueValue()

.../valueDomainEntry.id

VOC_registered_code_system

codeSystemId

VOC_registered_code_system isn't currently transferred to Lexgrid

sponsor

publisher

versionReportingMethod

licensingInformation

This field should really be transfer to copyright?

inUMLS

systemSpecificLocatorInfo

uri

isExternal

VOC_value_set

valueSetId

valueDomain.registeredName

valueSetName

valueDomain.valueDomain

Name is the key in LexGrid, and is optional in HL7 - will need to be addressed.

basedOnCodeSystem

valueDomain.defaultCodingScheme

Optional in HL7, required in LexGrid.

description

valueDomain.entityDescription

definingExpression

Not used.

allCodes

if 'true': valueDomain.conceptCode = "@", valueDomain.includeChildren='true'

isTaxonomicSet

No mapping available

valueSetAuthority

Included in valueSetID

valueSetNumber

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="7ff3f4224639a382-db9f80d4-44b843af-83b68af3-b576c54bfbae8893bc6b21ac"><ac:plain-text-body><![CDATA[

VOC_value_set_constructor

usedToBuildValueSet

new valueDomainEntry(parent = valueDomain[valueSetId=current()/.],id=unique())

]]></ac:plain-text-body></ac:structured-macro>

includesOrExcludesSet

valueDomainEntry.includesValueDomain

includeHeadCode

valueDomainEntry.isSelectable

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="51aaea2fcf3863b2-c61c4d46-43a649fc-b4d78f78-9444a7d3498c4742cbc083d0"><ac:plain-text-body><![CDATA[

valueDomainEntry.conceptCode = VOC_code_reference[usedToBuildValueSet=current().usedToBuildValueSet and isHeadCode=true].referencesConceptCode

Assumes that there always is a head code.

]]></ac:plain-text-body></ac:structured-macro>

VOC_vocabulary_domain_value_set

representsVocDomain

(selector)

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="2ce2deeb567d3797-6ad63a7c-48b8411c-b209a46e-95c0dccebafd2bcc33dcb145"><ac:plain-text-body><![CDATA[

definedByValueSet

codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].text

have to get 'representsVocDomain' into supportedProperty header

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="a97c566b46e4f087-2f5cdac1-4d614bde-82b18da1-433c49afd69c39dfda0bb076"><ac:plain-text-body><![CDATA[

appliesInContext

codingscheme['VocabularyDomain'].concept[representsVocDomain].property['definedByValueSet'].usageContext

Have to get all the contexts in the VocabularyDomain supportedContext header

]]></ac:plain-text-body></ac:structured-macro>

VCS_release_version

releaseId

codingSchemeVersion.version

This is not the way that things are done at the moment. At the moment, VCS_release_versions are loaded into systemRelease. Entered if one or more concept/relationship change.

valueDomainVersion.version

Set iff one or more value sets change

literal("false")

codingSchemeVersion.isComplete

All versions are delta's in this model

releaseAgency

releaseDate

codingSchemeVersion.versionDate

valueDomainVersion.versionDate

description

codingSchemeVersion.entityDescription

valueDomainVersion.entityDescription

editorID

There is no place for these currently.

forWhomID

concat('urn:oid:2.16.840.1.113883:',systemRelease.releaseId)

This corresponds to the containing system release when the sytem release occurs. It is empty until then.

Source Definition

Comments

Column

1

2

3

4

5

6

7

8

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="956e882041155596-e5a1f936-440f4b80-bd298ffd-d2753e819a1db1d1aa7c12f4"><ac:plain-text-body><![CDATA[

Line

1

<codingSchemeName>

<codingSchemeId>

<defaultLanguage>

<formalName>

[<version>]

[<source>]

[<description>]

[<copyright>]

This must be the first line. It contains the coding scheme metadata.

]]></ac:plain-text-body></ac:structured-macro>

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="278cd845c1581762-6375ca2d-41774d03-b29d9ac4-c9cd7e02aa74291da16bf7eb"><ac:plain-text-body><![CDATA[

2

[<code>]

<name>

[<description>]

Beginning of concepts in coding scheme.

<ac:structured-macro ac:name="unmigrated-wiki-markup" ac:schema-version="1" ac:macro-id="5e1342cc602fa3fa-abcc8855-4ab44658-b7c2aaaf-673360dfee18c39fcab3fca8"><ac:plain-text-body><![CDATA[

3

[<code>]

<name>

[<description>]

Represent hierarchical 'hasSubtype' relationship nesting (name hasSubtype name)