NIH | National Cancer Institute | NCI Wiki  

Error rendering macro 'rw-search'

null

Versions Compared

Old Version 9

changes.mady.by.user Unknown User (bleekert)

Saved on

compared with

New Version 10

changes.mady.by.user Unknown User (wileyal)

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.
Scrollbar
iconsfalse

Page info
title
title

Most OWL formatted loads make use of the least complicated procedure to achieve an installation.   However, it is a popular format and LexEVS offers some extensive options for customizing a terminology at load time.   As such, we'll go through Therefore step by step instructions are provided for an OWL load step by step. .

Step

Action

1

Obtain an OWL formatted source.
The National Center for Bio Ontology (NCBO) hosts OWL formatted and other sources and downloads of some sources are available.
screenshot illustrating stepImage Modified
 
Save the source to a local folder.

2

Load the source without options.
Load in Linux/Unix environments:

Code Block
./LoadOWL.sh -in "file:///home/LargeStorage/ontologies/owl/amino-acid.owl"

Load in Windows environments:

Code Block
LoadOWL.bat -in "file:///home/LargeStorage/ontologies/owl/amino-acid.owl"

Sample output on success:
screenshot of outputImage Modified

3

Load source with options:
Some sources may not offer much in the way of information about the terminology.   Since this information is often found in resources outside the terminology itself, LexEVS offers an option to load it in an accompanying manifest file.  
This is an example of an OWL file with minimal metadata about the terminology:
screenshot illustrating stepImage Modified
... and this manifest file allows the user to add appropriate metadata:
image of manifest fileImage Modified
Manifest file construction is detailed in the administrative guide.
Loading in LInux/Unix

Code Block
./LoadOWL.sh -in "file:///data/phont/LexEVS/test/resources/testData/camera.owl" -mf "file:///data/phont/LexEVS/test/resources/testData/Camera-manifest.xml"

Loading in Windows

Code Block
LoadOWL.bat -in  "file:///data/phont/LexEVS/test/resources/testData/camera.owl" -mf  "file:///data/phont/LexEVS/test/resources/testData/Camera-manifest.xml"



Scrollbar
iconsfalse