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National Cancer Institute Center for Bioinformatics
Product LexEVS 5.1 Release Notes
December 18 2009

h2. Product Changes

h3. Fixed Since Last Release - Bugs 
21567 - [{color:#0000ff}{+}ResourceManager cache not Thread-safe+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=21567&group_id=491&atid=1850]
21923 - [{color:#0000ff}{+}Connection Leak on SQLImplementedMethods 'mapToCodingSchemeName'+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=21923&group_id=491&atid=1850]
22355 - [{color:#0000ff}{+}LexGrid XML exporter not writing correctly if there are two Enitities with the same code but different namespace+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=22355&group_id=491&atid=1850]
22743 - [{color:#0000ff}{+}Unable to resolve GO and CTCAE hierarchy roots.+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=22743&group_id=491&atid=1850]
23278 - [{color:#0000ff}{+}CodedNodeGraph+{color} {color:#0000ff}+restrictToAssociations fails with Qualifier containing null value+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=23278&group_id=491&atid=1850]
23359 - [{color:#0000ff}{+}Supported Attributes missing from 5.1 NCI Thesaurus 09.08e+{color} |http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=23359&group_id=491&atid=1850]
23456 - [{color:#0000ff}{+}Loaded MedDRA - unable to see Code System Details+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=23456&group_id=491&atid=1850]
23755 - [{color:#0000ff}{+}Semantic_Type Property not being loaded by Meta Loader+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=23755&group_id=491&atid=1850]
23761 - [{color:#0000ff}{+}Delay advancing a ResolvedConceptReferencesIterator in Distributred mode+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=23761&group_id=491&atid=1850]
23858 - [{color:#0000ff}{+}Duplicate results returned on CodedNodeSet resolve+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=23858&group_id=491&atid=1850]
24148 - [{color:#0000ff}{+}PathToRoot over-protecting for looping hierarchy paths+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=24148&group_id=491&atid=1850]

h3.Feature Requests
21716 - [{color:#0000ff}{+}Add data from MRSAT file to NCI Meta data+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=21716&group_id=491&atid=1853]
21717 - [{color:#0000ff}{+}MRSAB conifgured to load for NCI Meta data+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=21717&group_id=491&atid=1853]
21718 - [{color:#0000ff}{+}MRREL data for NCi Meta - needs more data loaded+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=21718&group_id=491&atid=1853]
21719 - [{color:#0000ff}{+}Load MRRANK data for NCI Meta+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=21719&group_id=491&atid=1853]
21721 - [{color:#0000ff}{+}Add some additional data from MRHIER+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=21721&group_id=491&atid=1853]
21722 - [{color:#0000ff}{+}Make sure MRDOC data for NCI Meta is loaded+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=21722&group_id=491&atid=1853]
21723 - [{color:#0000ff}{+}Add more data from MRDEF file for NCI Meta+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=21723&group_id=491&atid=1853]
21724 - [{color:#0000ff}{+}Add data from MRCONSO file to NCI Meta data+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=21724&group_id=491&atid=1853]
21849 - [{color:#0000ff}{+}Add an algorithm for supporting case-insensitive substring search.+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=21849&group_id=491&atid=1853]
21850 - [{color:#0000ff}{+}Add a search algorithm for supporting case-insensitive substring search with an additional spelling-error tolerant feature.+{color} |http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=21850&group_id=491&atid=1853]
21879 - [{color:#0000ff}{+}Improve error messages (e.g., CNS.resolve, CNS.resolveToList, CNG.resolveToList)+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=21879&group_id=491&atid=1853]
21881 - [{color:#0000ff}{+}Improve ResolvedConceptReferencesIterator performance by reducing client-server network traffic in distributed mode.+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=21881&group_id=491&atid=1853]
21882 - [{color:#0000ff}{+}LexEVS 5.1 Value Domain Support+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=21882&group_id=491&atid=1853]
21976 - [{color:#0000ff}{+}Improve LexEVS Loading Framework+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=21976&group_id=491&atid=1853]
21980 - [{color:#0000ff}{+}Optimize Lucene code to improve search performance+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=21980&group_id=491&atid=1853]
21982 - [{color:#0000ff}{+}Implement a server side sort to improve performance+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=21982&group_id=491&atid=1853]
22006 - [{color:#0000ff}{+}General SQL optimization+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=22006&group_id=491&atid=1853]
22565 - [{color:#0000ff}{+}Add special character search+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=22565&group_id=491&atid=1853]
22893 - [{color:#0000ff}{+}Add asserted relations into the transitive table+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=22893&group_id=491&atid=1853]
23053 - [{color:#0000ff}{+}Load TUI as a Property in UMLS loader+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=23053&group_id=491&atid=1853]
23071 - [{color:#0000ff}{+}Allow multiple CUI Properties per UMLS Entity+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=23071&group_id=491&atid=1853]


h2. Important Remaining Issues / Limitations
* Value Domain (CTS 2 Value Set) support in the 5.1 release is not fully implemented and is offered as a capability that developers of LexEVS dependent applications and services can use to familiarize themselves with value domains in a non-production setting. Production use of Value Domain fuctionality should be delayed until the release of the 6.0 build of LexEVS. 
* LexBIGServiceConvenienceMethods in the 5.1 release are not all adapted for use in distributed mode and should not be attempted to be used distributed. These include getHierarchyOrphanedConcepts(), getHierarchyLevelNextCount(), getHierarchyLevelPrevCount(), addEntityLuceneIndexes(), removeEntityLuceneIndexes(), modifyEntityLuceneIndexes(). 


h2.Deferred/Deprecated Items
h3.Bugs
19406 - [{color:#0000ff}{+}Results not Deserializing Properly when using QueryModifiers on CQL Queries+{color}|https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=19406&group_id=491&atid=1850]
20590 - [{color:#0000ff}{+}Not all concept status property values are accessible through the API.+{color}|https://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=20590&group_id=491&atid=1850]
20653 - [{color:#0000ff}{+}Anonymous class hierarchy with unions not showing up correctly.+{color} |http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=20653&group_id=491&atid=1850]
20661 - [{color:#0000ff}{+}Ontology for Genetic Interval hierarchy does not match up Protege+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=20661&group_id=491&atid=1850]
20665 - [{color:#0000ff}{+}ECG Ontology missing Description, Date, Source and Creator fields+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=20665&group_id=491&atid=1850]
20684 - [{color:#0000ff}{+}Can not compute root node for OBI version v1.0.1423+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=20684&group_id=491&atid=1850]
20797 - [{color:#0000ff}{+}Strict Owl Processing+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=20797&group_id=491&atid=1850]
23770 - [{color:#0000ff}{+}OBI.owl loading - missing property "has curation status" for concepts+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=23770&group_id=491&atid=1850]
23806 - [{color:#0000ff}{+}OBI.owl loading - Incorrect infromation as value to the property "imported from"+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=23806&group_id=491&atid=1850]
24967 - [{color:#0000ff}{+}Null-Pointer Exception Thrown when no value-Domain content loaded.+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=24967&group_id=491&atid=1850]

h3.Feature Requests
21720 - [{color:#0000ff}{+}Load all MRMAP data+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=21720&group_id=491&atid=1853]
22877 - [{color:#0000ff}{+}MedDRA loading into LexEVS+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=22877&group_id=491&atid=1853]
22887 - [{color:#0000ff}{+}BDA Certification+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=22887&group_id=491&atid=1853]
23324 - [{color:#0000ff}{+}Option to include or exclude anonymous concepts.+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=23324&group_id=491&atid=1853] 
23598 - [{color:#0000ff}{+}REST API Features+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=23598&group_id=491&atid=1853]
23611 - [{color:#0000ff}{+}LexEVS Value Domain Support to include persistance of resolved value domain content+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=23611&group_id=491&atid=1853]
23643 - [{color:#0000ff}{+}Java 1.6+{color}|http://gforge.nci.nih.gov/tracker/index.php?func=detail&aid=23643&group_id=491&atid=1853]


h2. CORE Product Dependencies

Refer to the [CORE Product Dependency Matrix|https://wiki.nci.nih.gov/x/hIx8] for the caCORE SDK and other software technologies on which this release of this product relies.

h2. Release History

|| Release || Date ||
|LexEVS 5.1  \\ | 18 Dec 2009 \\ |
| LexEVS 5.0 \\ | 12 May 2009 \\ |
| LexEVS 4.2.1 \\ | 30 January 2009 \\ |
| LexEVS 4.2 \\ | 05 November 2008 \\ |
| EVS API 4.1.1 \\ | 08 August 2008 \\ |
| EVS API 4.1 \\ | 27 June 2008 \\ |
| EVS API 4.0 \\ | 07 November 2007 \\ |
| caCORE 3.2 \\ | 22 December 2006 \\ |
| caCORE 3.1 \\ | 27 March 2006 \\ |
| caCORE 3.0.1.3 \\ | 12 December 2006 \\ |
| caCORE 3.0.1.2 | 18 October 2005 \\ |
| caCORE 3.0.1.1 | 30 August 2005 \\ |
| caCORE 3.0.1 | 22 July 2005 \\ |
| caCORE 3.0 \\ | 31 March 2005 \\ |
| caCORE 2.1 \\ | 28 May 2004 \\ |
| caCORE 2.0.1 \\ | 19 December 2003 \\ |
| caCORE 2.0 \\ | 31 October 2003 \\ |
| caCORE 1.2 \\ | 13 June 2003 \\ |
| caCORE 1.1 \\ | 07 February 2003 \\ |
| caCORE 1.0 \\ | 29 August 2002 \\ |
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