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National Cancer Institute Center for Bioinformatics
NCI Protege 1.2.3.25
...
Patch
...
Release
...
Notes
...
(Draft)
...
28
...
08
...
2008
Release History
Release | Date |
|---|---|
1.0 | Jun 07 |
1.1 | Sept 07 |
1.2.0 |
...
Dec 07 | |
1.2.1 |
...
Feb 08 | |
1.2.2 |
...
May 08 | |
1.2.3 |
...
Jul |
...
08 |
1.2.3 |
...
Patch | Aug 08 |
New Features and Updates
Highlights of this patch release are:
- Concurrency management in Run Time Classification
- Increased Performance of the Prompt User tab
This patch release for version 1.2.3
...
of
...
the
...
Protege
...
NICEditTab
...
plugin
...
was
...
targeted
...
towards
...
increasing
...
the
...
performance
...
of
...
the
...
Run
...
Time
...
Classification
...
(RTC).
...
The
...
change
...
is
...
entirely
...
in
...
the
...
infrastructure.
...
The
...
RTC
...
in
...
the
...
current
...
release
...
synchronizes
...
its
...
data
...
against
...
the
...
Protege
...
server
...
rather
...
than
...
the
...
Protege
...
client,
...
thereby
...
eliminating
...
network
...
latency
...
issues
...
affecting
...
all
...
users
...
(but
...
with
...
a
...
larger
...
impact
...
on
...
remote
...
users).
...
- Also,
...
- a
...
- performance
...
- enhancement
...
- has
...
- been
...
- done
...
- in
...
- Prompt:
...
- an
...
- inefficient
...
- lookup
...
- algorithm
...
- has
...
- been
...
- replaced
...
- with
...
- a
...
- solution
...
- that
...
- involves
...
- caching
...
- of
...
- data
...
- instead.
...
- In
...
- addition
...
- to
...
- the
...
- patch
...
- release
...
- of
...
- the
...
- software,
...
- a
...
- Citrix
...
- server
...
- has
...
- been
...
- set
...
- up
...
- and
...
- already
...
- deployed
...
- to
...
- reduce
...
- connectivity
...
- issues
...
- affecting
...
- remote
...
- users.
...
- The
...
- Citrix
...
- server
...
- is
...
- currently
...
- supporting
...
- NCIT
...
- editing,
...
- but
...
- it
...
- will
...
- be
...
- expanded
...
- to
...
- support
...
- BGT
...
- editing
...
- in
...
- the
...
- future.
...
Bugs
...
Fixed
...
Since
...
Last
...
Release
...
List
...
of
...
bug
...
fixes
...
in
...
1.2.3.25
...
(Patch
...
release)
...
- 9295
...
- Ability
...
- to
...
- remove
...
- menu
...
- options
...
- by
...
- configuration
...
- 11119
...
- PROMPT
...
- -
...
- Exception
...
- when
...
- navigating
...
- from
...
- Table
...
- View
...
- to
...
- Tree
...
- view
...
- 12025
...
- Incorrect
...
- behavior
...
- while
...
- splitting,
...
- creating
...
- new
...
- classes
...
- 12342
...
- PROMPT
...
- -
...
- Exception
...
- when
...
- selecting
...
- 'changed
...
- by'
...
- panel
...
- in
...
- 'table
...
- view'
...
- 12353
...
- OK
...
- button
...
- off
...
- screen
...
- with
...
- long
...
- winded
...
- invalid
...
- property.
...
- 12574
...
- Edit
...
- Class
...
- and
...
- View
...
- Instance
...
- buttons
...
- are
...
- broken
...
- -
...
- dup
...
- of
...
- 12365
...
- 12932
...
- Unmarshal
...
- Exception
...
- 4057
...
- no
...
- copy-and-paste
...
- capability
...
- in
...
- collaboration
...
- panel
...
- 14290
...
- Problem
...
- tracking
...
- changes
...
- of
...
- defining
...
- relations
...
- if
...
- more
...
- than
...
- one
...
- restriction
...
- is
...
- present
...
- 14507
...
- Prompt
...
- reports
...
- all
...
- concepts
...
- changed
...
- -
...
- concepts
...
- get
...
- new
...
- properties
...
- added
...
- 15185
...
- No
...
- date
...
- on
...
- ALT_DEFINITION
...
- for
...
- NCIt
...
- 15228
...
- Exception
...
- when
...
- edit
...
- and
...
- classify
...
- at
...
- same
...
- time
...
- 15395
...
- NCIt
...
- Protege
...
- is
...
- SLOW
...
- 15592
...
- Frame
...
- caching
...
- on
...
- Protege
...
- server
...
- 15594
...
- :ROLE
...
- concrete
...
- -
...
- Prompt
...
- bug
...
- fix
...
Known
...
Issues
| Note | ||||
|---|---|---|---|---|
| =
| |||
| } A number of bug reports involved irreproducible items that have now been identified as originating in the software components that deal with database transactions. Because of the amount of work involved to correct this, this patch release does not include fixes for these bugs, they have been scoped for version 1.3 of the software. {note} |
To
...
minimize
...
the
...
likelihood
...
of
...
these
...
transaction
...
issues
...
occurring:
...
- When
...
- saving
...
- a
...
- concept,
...
- users
...
- need
...
- to
...
- click
...
- OK
...
- on
...
- the
...
- notification
...
- dialog
...
- that
...
- is
...
- displayed
...
- when
...
- the
...
- Save
...
- is
...
- successful
...
- when
...
- it
...
- first
...
- pops
...
- up,
...
- e.g.
...
- try
...
- not
...
- to
...
- take
...
- a
...
- break
...
- from
...
- editing
...
- until
...
- the
...
- OK
...
- dialog
...
- has
...
- been
...
- clicked.
...
- If
...
- a
...
- "create
...
- class"
...
- action
...
- fails,
...
- do
...
- not
...
- attempt
...
- to
...
- execute
...
- it
...
- again
...
- right
...
- away,
...
- you
...
- can
...
- attempt
...
- it
...
- on
...
- your
...
- next
...
- login.
...
GForge
...
Open
...
Items
...
(Deferred
...
to
...
1.3
...
release
...
or
...
unresolved)
...
- 11115
...
- PROMPT
...
- -
...
- 'Table
...
- View'
...
- crashes
...
- after
...
- visting
...
- 'Show
...
- sources'
...
- window
...
- 11894
...
- When
...
- a
...
- class
...
- defaults
...
- to
...
- owl:thing
...
- as
...
- a
...
- parent
...
- it
...
- disappears
...
- 13884
...
- Create
...
- a
...
- Protege
...
- nightly
...
- build
...
- script
...
- 15944
...
- PROMPT:
...
- namespaces
...
- in
...
- Table
...
- view
...
- 16248
...
- PROMPT
...
- extra
...
- classes
...
- added
...
- (Axiom)
...
- 11553
...
- Apparent
...
- Failure
...
- to
...
- log
...
- out.
...
- 11614
...
- Prompt
...
- -
...
- When
...
- accepting
...
- changes
...
- in
...
- all
...
- children
...
- in
...
- branch,
...
- children
...
- disappear
...
- fm
...
- tree
...
- 3537
...
- Synchronization
...
- of
...
- rdfs:label
...
- and
...
- Preferred_Name
...
- 8682
...
- Merged
...
- and
...
- Retired
...
- concepts
...
- are
...
- not
...
- properly
...
- tagged
...
- with
...
- Retired_Concept
...
- 9298
...
- Prompt
...
- -
...
- accept
...
- and
...
- reject
...
- icons
...
- in
...
- 'changed
...
- by'
...
- panel
...
- of
...
- 'table'
...
- view
...
- don't
...
- work
...
- 10185
...
- Prompt:
...
- Parent
...
- concept
...
- flagged
...
- as
...
- changed
...
- when
...
- a
...
- child
...
- is
...
- added
...
- 10186
...
- Prompt:
...
- Concept
...
- flagged
...
- as
...
- changed
...
- when
...
- it
...
- is
...
- copied
...
- 12358
...
- PROMPT
...
- -
...
- Reject
...
- button
...
- in
...
- Tree
...
- view
...
- produces
...
- error
...
- message
...
- to
...
- the
...
- console
...
- 12935
...
- text
...
- is
...
- not
...
- trimmed
...
- 14056
...
- Permission
...
- allows
...
- delete
...
- of
...
- definition
...
- (see
...
- comments)
...
- 14939
...
- Copy
...
- pane
...
- Preferred_Name
...
- issues
...
- after
...
- a
...
- modeling
...
- error
...
- 14973
...
- class
...
- disappears
...
- after
...
- editing
...
- (winds
...
- up
...
- under
...
- Thing
...
- ?)
...
- 15230
...
- Error
...
- when
...
- Retiring
...
- a
...
- class
...
- with
...
- existing
...
- Editor_Note
...
- or
...
- DesignNote
...
- 15247
...
- Failure
...
- to
...
- cross
...
- check
...
- Preferred
...
- Term
...
- in
...
- Protege
...
- 1.2.3
...
- release
...
- 15788
...
- Save
...
- Confirmation
...
- Popup
...
- Dialog
...
- blocks
...
- other
...
- editors
...
- 16058
...
- Class
...
- Creation
...
- Problems
...
- 16076
...
- Transaction
...
- didn't
...
- close
...
- in
...
- a
...
- class
...
- copy
...
- operation
...
- from
...
- the
...
- Copy
...
- panel
...
CORE
...
Product
...
Dependencies
...
No
...
caCORE
...
dependencies.
...
This
...
software
...
is
...
used
...
for
...
editing
...
and
...
maintaining
...
NCI
...
Thesaurus
...
and BiomedGT
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BiomedGT
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