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National Cancer Institute Center for Bioinformatics \\
NCI Protege 1.3 and patch Release Notes \\
09 04 2009

h2. Product Changes

Items marked *New Feature:* can be found in the GForge project Feature Requests tracker group. Items marked *Bug:* can be found in the Bugs tracker group.

The major change in this release is the addition of "database inclusion" which enables other terminologies to be imported and "federated". Another major change is workflow additions that enable proposals to be retrieved from the BiomedGT wiki.

h3. New Features

|| Tracker || Description || Priority ||
| caCORE:GF#12247 \\ | Database inclusion | 1 |
| caCORE:GF#7518 | Visibility of 'changes' ontology | 1 |
| caCORE:GF#15251 | The order of items in config file is important | 1 |
| caCORE:GF#16191 | Export of inferred Ontology - Tweaks to output file | 1 |
| caCORE:GF#13842 | Incremental Round Trip from Protege to Wiki \\ | 1 |
| caCORE:GF#11018 | catch client exception when server is down or being bounced \\ | 1 |
| caCORE:GF#12068 | Apply the same restrictions as Protege on imported data from SMW \\ | 1 |
| caCORE:GF#12935 | text is not trimmed \\ | 1 |
| caCORE:GF#3537 | Synchronization of rdfs:label and Preferred_Name \\ | 1 |

h3. Bugs

|| Tracker || Description || Priority ||
| caCORE:GF#8714 \\ | Admin component of protege server goes to sleep on extended inactivity periods | 1 |
| caCORE:GF#3435 | Restriction INHERITED listing includes duplicate and superseded values | 1 |
| caCORE:GF#8745 | Removal of duplicate GO_Annotations from the Complex Properties | 1 |
| caCORE:GF#9298 | Prompt - accept and reject icons in 'changed by' panel of 'table' view don't work | 1 |
| caCORE:GF#14296 | Copy tab panes don't have header labels | 1 |
| caCORE:GF#14557 | Unnecessary warning dialog when saving with no semantic type set | 1 |
| caCORE:GF#15131 | Cancel in classification progress dialog does not terminate the classification | 1 |
| caCORE:GF#16400 | split tab allows creation of new roots | 1 |
| caCORE:GF#16076 | Transaction didn't close in a class copy operation from the Copy panel | 1 |
| caCORE:GF#16058 | Class Creation Problems | 1 |
| caCORE:GF#15788 | Save Confirmation Popup Dialog blocks other editors | 1 |
| caCORE:GF#14973 | class disappears after editing(wind up under \*Thing\* ?) | 1 |
| caCORE:GF#16252 | Lengthy and incorrect transactions in EditTab \\ | 1 |
| caCORE:GF#16258 | Can't retire some concepts that had referenced classes \\ | 1 |
| caCORE:GF#15230 | Error when Retiring a class with existing Editor_Note or DesignNote \\ | 1 |
| caCORE:GF#14056 | Permission allows delete of definition (see comments) \\ | 1 |
| caCORE:GF#8682 | Merged and Retired concepts are not properly tagged with Retired_Concept \\ | 1 |
| caCORE:GF#14966 | Business rule - Single restriction as N'S condition cannot be quantified by 'all' \\ | 1 |
| caCORE:GF#14404 | if character in slot matches delimiter then export misaligns values \\ | 1 |
| caCORE:GF#15131 | Cancel in classification progress dialog does not terminate the classification \\ | 1 |
| caCORE:GF#15921 | Explanation server synchronization issue \\ | 1 |
| caCORE:GF#14939 | Copy pane Preferred_Name issues after a modeling error \\ | 1 |
| caCORE:GF#12066 | Different displays of attributes in top and bottom pane of workflow \\ | 1 |
| caCORE:GF#15913 | Save should not be an option on the Merge panel until after a Merge or UnMerge \\ | 1 |
| caCORE:GF#13712 | SMW manifestation - If source not found, may enter BioCarta \\ | 1 |
| caCORE:GF#12068 | Apply the same restrictions as Protege on imported data from SMW \\ | 1 |
| caCORE:GF#9455 | Editing the DEFINITION Annotation property \\ | 1 |
| caCORE:GF#15247 | Failure to cross check Preferred Term in Protege 1.2.3 release \\ | 1 |
| caCORE:GF#15613 | the start_explanation_server.sh script does not have appropriate commands \\ | 1 |
| caCORE:GF#12131 | Inconsistent naming used in Configuration dialog \\ | 1 |
| caCORE:GF#12831 | Removes/Corrupts Go_Annotation if have the exact same Long_Definition \\ | 1 |

h2. Important Remaining Issues

None listed

h2. CORE Product Dependencies

Refer to the [CORE Product Dependency Matrix|https://wiki.nci.nih.gov/x/hIx8] for the caCORE SDK and other software technologies on which this release of this product relies.

h2. Release History

|| Release || Date ||
| 1.3.0 \\ | Mar 2009 \\ |
| previous version release number hyperlinked to the posted release notes \\ | previous version release date |
| previous version release number hyperlinked to the posted release notes | previous version release date |
| continue previous version release numbers in descending order | show all releases and dates |
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