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May 27,
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2008
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National
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Cancer
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Institute
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Center
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for
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Bioinformatics
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and
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Information
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Technology
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Release | Date |
|---|---|
1.0 |
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June |
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2007 |
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1.1 |
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Sept |
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2007 |
1.2.0. |
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December |
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2007 |
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1.2.1. |
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February |
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2008 |
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1.2.2 |
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May |
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2008 |
1.2.3 |
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July |
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2008 |
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This
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release
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contains
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3
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new
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features
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-
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(1)
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Run
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time
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classification;
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(2)
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Advanced
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Query
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Plugin
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reporting
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capability;
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(3)
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additional
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configurability
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This
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new
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functionality
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allows
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editors
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to
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classify
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BiomedGT,
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or
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NCIT,
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in
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the
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Protege
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client-server
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environment
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used
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by
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the
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EVS.
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It
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depends
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on
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an
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explanation
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server
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running
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independently
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of
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the
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Protege
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server.
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The
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explanation
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server
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is
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initialized
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with
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the
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same
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data
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served
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by
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the
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Protege
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server,
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and
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is
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maintained
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synchronized
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with
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the
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database
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as
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editing
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occurs
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by
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the
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Protege
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client.
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Because
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of
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initialization
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activities,
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the
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first
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classification
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action
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by
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a
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client
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will
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take
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a
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number
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of
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minutes;
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subsequent
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classifications
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will
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be
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faster.
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Salient
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points:
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Known
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issues:
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The
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last
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two
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issues
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will
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be
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addressed
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in
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a
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future
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patch.
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However,
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a
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"remote
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access"
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server
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is
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being
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set
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up
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that
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will
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alleviate
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communications
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overhead.
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An
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export
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function
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(leveraged
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from
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an
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existing
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plugin
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in
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Protege)
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has
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been
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added
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to
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the
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AQP
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which
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allows
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very
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detailed
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reports
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to
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be
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produced
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in
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a
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tabular
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format.
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This
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function
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doesn't
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replace
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the
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Report
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Writer.
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Although
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written
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to
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support
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editing
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activities
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in
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the
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EVS,
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the
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NCIEditTab
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plugin
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has
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introduced
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various
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user
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interfaces
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and
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behaviors
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that
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make
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it
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an
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attractive
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plugin
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to
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other
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editing
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groups.
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Hence
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configurability
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has
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been
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a
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background
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refactoring
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activity
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as
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development
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progressed.
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This
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is
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noted
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here
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because
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with
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the
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EVS
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now
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editing
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BiomedGT
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and
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NCIT,
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this
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aspect
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becomes
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very
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important
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as
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the
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internal
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format
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of
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annotations
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in
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BGT
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is
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expected
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to
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start
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deviating
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significantly
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from
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NCIT's
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in
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the
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near
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future.
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Some
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features
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related
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to
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display
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labels
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remain
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to
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be
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implemented.
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Salient
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points:
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| Note | ||||
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| =
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| } The addition of copy-and-paste to the collaborative panel, GUI and behavior enhancements to the workflow plugin, increased support for semantic types. {note} h3. Enhancements * 2604 Real Time Classification * 11962 Chat window in Protege |
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| Wiki Markup |
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h3. Bugs
* 8376 Need Review button in Copy tab
* 8634 Error when input an ampersand or less than character
* 11414 Batch load creates duplicates if parent has no children
* 12069 Not adding prefix of Proposed\_ in tree
* 12081 Duplication of the Concept_Type property not always recognized by the batch editor
* 12321 Save does not update status to Updated
* 12322 Closing and reopening project results in blank NCI Edit Tab
* 12473 Workflow - Last Updated date does not retain seconds
* 12560 archive not working correctly
* 12818 Column formatting for assignment table
* 13220 Cannot save some modifications made to concepts
* 13257 Error message following 'save' of concept duplicated of 13220
* 13337 RE: Frozen interface after Batch Loader action
* 13389 Drops downs in dialogs should be controlled by ncitab.xml
* 13424 Weird behavior during split
* 13493 C-NOCODE on creation of a new class
* 13518 Prompt for missing Semantic_Type
* 13520 Right click on an Association in the Copy Tab does not allow Delete
* 13716 association persists after being deleted
* 13723 Edit Concept loads incorrect concept when using suggested assignment
* 13810 NCIWorkflow - Manager can not Delete SUGGESTED item
* 13819 (duplicate of 14414) Problem with Split function in NCIt instance
* 13823 No warning when leaving Copy pane
* 13831 NCIWorkflow - Modeler can not delete SUGGESTED items
* 13834 NCIWorkflow - Adding a note at the same workflow item at the same time
* 13849 Entire batch fails to load if contains one error
* 13862 Changing superclass to owl:Thing results in missing framework
* 13950 code C_NOCODE
* 14002 exceptions when creating new users in workflow
* 14056 NullPointer exception thrown when editing NCI Drug Dictionary definition
* 14057 no copy-and-paste capability in collaboration panel
* 14103 RTC fails
* 14290 Problem tracking changes of defining relations if more than one restriction is present
* 14331 Lower pane review button disabled if do Copy or Split
* 14343 Unable to add definitions of various kinds
* 14404 If character in slot matches delimiter then export misaligns values
* 14405 Change default delimiters of AQP export
* 14406 AQP search results display properties
* 14414 Lower Split pane not visible after Clone in Copy tab
* 14481 Invalid Concept Successfully Created from a Batch Load
* 14486 Advanced Query report output shows display slot rather than slot name
* 14829 Edit Concept loads incorrect concept for the manager
* 14926 5 to 10 minutes to start client
* 15001 After UnMerge the concept remains a child of Premerged_Concepts
* 15002 PreRetired concept doesn't appear under Preretired_Concepts
h2. 4.0 Known Issues
* Re: GForge #14533 - Batch load in client server mode \-\- Please give batch loads of over 200 concepts to workflow manager to load in standalone mode \-\- known issues with large batch loads in client server mode. The loads are quick, about 10 minutes for 250.
* Special Review User needs to be created for NCI Thesaurus, and config file modified to give this user privilege to edit those definitions. (Batch load may still work for loading these definitions.)
* Export from AQP \-\- When exporting concepts that contain properties that have values that contain commas (such as definition) the data will display incorrectly.
* Exporting from AQP \-\- HINT - When you export to Excel, if you are using the new Excel 7.0, you need to import the file first.
* Export from AQP \-\- HINT - When you export to Excel, if you don't like the file and want to make a change, get out of Excel before creating a new export, or save the new file with a different name because Excel will lock the file.
* GForge #14507- Prompt reports all concepts changed - concepts get new properties added
* Gforge #13614 - Missing frame node in tree
* GForge #14406 - AQP search results display properties
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