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This page provides examples for the ISA-TAB-Nano Investigation files, leveraging data from the Nanotechnology Characterization Laboratory (NCL) as an example (NCL200612A).

The ISA-TAB Investigation File consists of the following sections:

  • ONTOLOGY SOURCE REFERENCE
  • INVESTIGATION
  • INVESTIGATION CONTACTS
  • INVESTIGATION PUBLICATION
  • STUDY
  • STUDY DESIGN DESCRIPTORS
  • STUDY CONTACTS
  • STUDY PUBLICATIONS
  • STUDY ASSAYS
  • STUDY FACTORS
  • STUDY PROTOCOLS

The ISA-TAB Investigation file was extended to support ISA-TAB-Nano.  TABLE 1 represents extensions made to each section of the ISA-TAB Investigation file in support of ISA-TAB-Nano.

TABLE 1. ISA-TAB-Nano Investigation File Extensions to ISA-TAB

Study outcome

Section

Field

Field Status (if applicable)

INVESTIGATION

Investigation diseaseDisease

RequiredOptional

INVESTIGATION

Investigation disease term accession numberDisease Term Accession Number

OptionalRequired

INVESTIGATION

Investigation disease term source Disease Term Source REF

RequiredOptional

INVESTIGATION

Investigation outcomeOutcome

Optional

STUDY

Study diseaseDisease

RequiredOptional

STUDY

Study disease term accession numberDisease Term Accession Number

OptionalRequired

STUDY

Study disease term source REF

Required

STUDY

Disease Term Source REF

Optional

STUDY

Study Outcome

Optional

STUDY FACTORSStudy Factor Name Term Accessions NumberOptional
STUDY FACTORSStudy Factor Name Term Source REFOptional

STUDY ASSAYS

Study assay measurement nameAssay Measurement Name

OptionalRequired

STUDY ASSAYS

Study assay measurement name term accession numberAssay Measurement Name Term Accession Number

OptionalRequired

STUDY ASSAYS

Study assay measurement name term source REFRequiredAssay Measurement Name Term Source REF

Optional

The sub-sections that follow identify the fields associated with each ISA-TAB-Nano Investigation File section.

Ontology Source Reference

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