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Before uploading a file to the CSSI DCC portal, consult the ISA-Tab specification 

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. This specification describes how to structure your investigation data to create an Investigation-Study-Assay (ISA) archive. This may involve configuring it using open-source software
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made for this purpose.

Each ISA archive that you upload must be in .zip format. Use Globus to upload a file larger than 100 GB.

To upload an ISA archive

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If your user account has a role with the Upload Files, Group Owner, and Manage Multi Upload permissions, additional tabs are visible on this page. This section describes how to use only the Upload Single ISA Archive tabs. Instructions for the remaining tabs will be available in the CSSI DCC Portal Administrator's Guide.

Uploading Data from Your File System

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Uploading Data from Your File System
Uploading Data from Your File System

Uploading Large Files with Globus

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Uploading Large Files from Globus
Uploading Large Files from Globus

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Enter a unique name for your new folder. Note that this name can differ from the title within the ISA archive.

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If the File Upload section of the page is not visible, click Open in the row for the folder of interest to show it.

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Select the ISA archive you want to upload to this folder in one of the following ways:

  • Drag and drop the file from your computer to the Drop your files here box surrounded by the dashed lines:
    Drop your files here or click to browseImage Removed

  • Click the Drop your files here box image and browse to where the file is stored.
    The file is listed in the File Upload area and the status is listed as Ready.

If the file is 100 GB or smaller, click Upload selected files. If the file is larger than 100 GB, use Globus instead. 

The file begins processing and the status moves through the following stages:

  • Uploading
  • Processing Queued    
  • Queued
  • Preparing uploaded files
  • Parsing ISA TAB Metadata    
  • Preparing Data Files    
  • Validating assay files and file sizes    
  • File processed successfully    
  • Success: file processed successfully  

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