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Saved on Apr 05, 2022

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changes.mady.by.user Unknown User (bearceba)

Saved on Apr 05, 2022

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Activities completed this month
MIDRC is up and running and challenge details are being ironed out: http://midrc-medici-competitions.eastus.cloudapp.azure.com/ CodaLab (Open Source Team): Created an updated to the highlights page: https://github.com/codalab/codalab-competitions/commit/5eb7272cb56821977940f5768baa779c0922409e Located: https://codalab.lisn.upsaclay.fr/highlights.html Federated learning challenge is being built. Initial design: Temp site is up to furnish challenge data: https://medici-codalab-main.eastus.cloudapp.azure.com/competitions/24

Activities completed this month

Planned for next month
MIDRC Challenge 0 which will feature docker submissions as well as the Image Comparator app and a jupyter notebook for annotator analysis. - Still waiting on credits for Azure use. UPDATE (3/31/2022): Infrastructure is built and now we are editing the template challenge to be the real challenge. Federated Learning Challenge: Still need VPN access to environment. Kendall Schmidt (from ACR) and Holger Roth (from NVIDIA) are creating a bash script that kicks off a participant container. I will be in charge of orchestrating the start of that script from the MedICI website. CodaLab (Open Source Team): Adding more functionality to the highlights page for the addition of dynamic news.

Planned for next month

MIDRC Challenge 0 which will feature docker submissions as well as the Image Comparator app and a jupyter notebook for annotator analysis. - Still waiting on credits for Azure use.
- UPDATE (3/31/2022): Infrastructure is built and now we are editing the template challenge to be the real challenge.
Federated Learning Challenge:
- Still need VPN access to environment.
- Kendall Schmidt (from ACR) and Holger Roth (from NVIDIA) are creating a bash script that kicks off a participant container.
- I will be in charge of orchestrating the start of that script from the MedICI website.
CodaLab (Open Source Team):
- Adding more functionality to the highlights page for the addition of dynamic news.

Paused
Continue getting CodaLab running on NCI's network and VMs: Issues: Credentials for AWS bucket not active and we cannot talk to the bucket. Need to reach out to Tony Bigham (tony.bigham@nih.gov) to get those refreshed. On my local machine I deployed the updated CodaLab code and tried connecting to my own S3 bucket instance. I noticed that there is a javascript error making the request to the bucket. I need to setup up a similar but more simple setup to figure out how to upload data to s3 via javascript http requests so that I can trouble shoot the error on NCI's system and or mine. If we could use Azure, this might be resolved. UPDATE (01_31_2022): May have a work around with a storage service called MINIO.

Paused

Continue getting CodaLab running on NCI's network and VMs:
1. Issues:
  1. Credentials for AWS bucket not active and we cannot talk to the bucket. Need to reach out to Tony Bigham (tony.bigham@nih.gov) to get those refreshed.
  2. On my local machine I deployed the updated CodaLab code and tried connecting to my own S3 bucket instance. I noticed that there is a javascript error making the request to the bucket. I need to setup up a similar but more simple setup to figure out how to upload data to s3 via javascript http requests so that I can trouble shoot the error on NCI's system and or mine. If we could use Azure, this might be resolved.
2. UPDATE (01_31_2022): May have a work around with a storage service called MINIO.

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