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titleDocument Information

Author: Craig Stancl, Scott Bauer, Cory Endle
Email: Stancl.craig@mayo.edu, bauer.scott@mayo.edu, endle.cory@mayo.edu
Team: LexEVS
Contract: S13-500 MOD4
Client: NCI CBIIT
National Institutes of Heath
US Department of Health and Human Services

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CBIIT or Stakeholder Organization

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Reviewer's Comments (If disapproved indicate specific areas for improvement.)

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Sherri de Coronado

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Kumar Kuntipuran

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The purpose of this document is to document the project requirements for the National Cancer Institute Center for Biomedical Informatics and Information Technology (NCI CBIIT)LexEVS Release 6.23.

Requirements Definition

59037163961725

JIRA item

Functional RequirementDesign Reference
LEXEVS-669

Latest Version of SNOMEDCT Does not load transitivity table

N/A
LEXEVS-671

SNOMEDCT does not load hierarchy or root nodes.

N/A
LEXEVS-598

TreeService getTree method can fail when the root node code appears in multiple namespaces.

N/A
LEXEVS-667

TreeService getTree method fails on remote call when the root node code appears in multiple namespaces.

N/A
LEXEVS-686

lbRuntime scripts dependent on lexgrid.org

N/A
LEXEVS-685

OWL2 Loader loads disJointWith association as equivalent class

N/A
LEXEVS-684

OWL2 Loader does not properly Parse output from render

N/A
LEXEVS-623

Mapping extension search methods fail on distributed mode.

N/A
LEXEVS-614

OWL2 associations and annotations on associations.

LEXEVS-570Loader messaging is poor and unhelpful

N/A
LEXEVS-Need a convenience method for identifying and retrieving resolved value set coding schemes.LexEVS 6.2 Design Document - Detailed Design - Make it easy to do retrieval of only active concepts in a terminology through the/ a service636

LexEVSValueSetDefinitionServices exportValueSetResolution method returns unprocessible InputStream.

N/A
LEXEVS-688

Resolved Value Set Doesn't persist Coding Scheme versions

N/A
LEXEVS-721

OWL loader does not account for inconsistencies in namespace, coding scheme URL's

N/A
LEXEVS-680

Remove GEM loader documentation

N/A
LEXEVS-681

LexEVS distributed landing page typos

N/A
LEXEVS-641

OWL2 loader uses VersionIRI, but doesn't have a wide enough column

LexEVS 6.3 Design Document - Detailed Design - OWL2 enhancements, modifications and new features
LEXEVS-583

OWL2 data: restrictions on a class using datatype properties

LexEVS 6.3 Design Document - Detailed Design - OWL2 enhancements, modifications and new features
LEXEVS-679

Expand loader documentation to include creating, running, and errors information.

N/A
LEXEVS-689

Need to insure backward compatability for the convenience methods

N/A
LEXEVS-775OWL2 Loader - Ontology metadataN/A

LEXEVS-776

OWL2 Loader - external classN/A
LEXEVS-777OWL2 Loader - datatype propertyN/A
LEXEVS-778OWL2 Loader - annotation propertyN/A
LEXEVS-779OWL2 Loader - anonymous class (test with unattached restriction)N/A
LEXEVS-780OWL2 Loader - association, annotation (literal)N/A
LEXEVS-781OWL2 Loader - association, annotation (anyURI)N/A
LEXEVS-782OWL2 Loader - association, annotation (string)N/A
LEXEVS-783OWL2 Loader - annotation on anonymous class (test with unattached restriction)N/A
LEXEVS-784OWL2 Loader - annotation on association, object + annotation (v1)N/A
LEXEVS-785OWL2 Loader - annotation on association, annotation (literal)N/A
LEXEVS-786OWL2 Loader - annotation on association, annotation (anyURI)N/A
LEXEVS-787OWL2 Loader - annotation on association, annotation (string)N/A
LEXEVS-788OWL2 Loader - subclassOf, external named classLEXEVS-605New Script for Removing TagsN/A
LEXEVS-Make it easy to do retrieval of only active concepts in a terminology through the/ a serviceLexEVS 6.2 Design Document - Detailed Design - Make it easy to do retrieval of only active concepts in a terminology through the/ a service789OWL2 Loader - association internal class (PrognosisGood)N/A
LEXEVS-790OWL2 Loader - association external class (melanocyte)N/A
LEXEVS-791OWL2 Loader - equivalentClass, external named classLEXEVS-633Remove Struts and all dependencies from the caCORE based implementationN/A
LEXEVS-792OWL2 Loader - equivalentClass, intersection named classesRemove CTS2 Java API from 6.2 releaseN/A
LEXEVS-793OWL2 Loader - equivalentClass, union named disjoint classesProvide any needed support for CENTOS upgradeN/A
LEXEVS-618794OWL2 Loader - equivalentClass, complement named classProvide support, application changes as needed for moving the LexEVS api to Tomcat from JBossN/A
LEXEVS-619Provide application changes to support MySQL 5.5795OWL2 Loader - equivalentClass, some datatype restrictionN/A
LEXEVS-608Update LexEVS to Java 1.7 compatability796OWL2 Loader - equivalentClass, all datatype restrictionN/A
LEXEVS-621Remove Security Risk form caCORE lexevsapi implemenation (Struts issue)797OWL2 Loader - equivalentClass, datatype hasValue (inconsistent class)N/A
LEXEVS-798OWL2 Loader - equivalentClass, some objectype restrictionN/A
LEXEVS-799OWL2 Loader - equivalentClass, some objectype restriction external classN/A
LEXEVS-800OWL2 Loader - equivalentClass, all objectype restriction external classN/A
LEXEVS-801OWL2 Loader - equivalentClass, all objectype restrictionN/A
LEXEVS-624Upgrade of the Apache Struts to release 2.3.16.1 to LexEVS 6.1-802OWL2 Loader - equivalentClass, object hasValueN/A
LEXEVS-803OWL2 Loader - equivalentClass, intersection object restrictionsN/A
LEXEVS-804OWL2 Loader - equivalentClass, union object restrictionsN/A
LEXEVS-805OWL2 Loader - equivalentClass, role groupN/A
LEXEVSCTS2-1UI - Create an NCI CTS2 Value Set ViewerLexEVS 6.2 Design Document - Detailed Design - UI - Create an NCI CTS2 Value Set Viewer
LEXEVS-806OWL2 Loader - equivalentClass, class expression (intersection object & datatype)N/A
LEXEVS-807OWL2 Loader - equivalentClass, class expression (union object & datatype)N/A
LEXEVS-808OWL2 Loader - Create test cases to load and remove unannotated filesN/A
LEXEVS-811LexEVS should return active and not active entities by defaultLEXEVSCTS2-2CTS2 Service - Update LexEVS CTS2 Service to the CTS2 1.1 specification as implemented in the CTS2 Development FrameworkN/A
LEXEVSCTS2-328

NLM (VSAC) CTS2 Service

- Create CTS2 Value Set module		LexEVS 6.2 Design Document - Detailed Design - CTS2 Service - Create CTS2 Value Set module

authentication is failing

N/A
LEXEVSCTS2-8

UI - Only 50 entries are returned for value sets that have more than 50 entries

N/A
LEXEVSCTS2-27Create interactive CTS2 API documentationN/A
LEXEVSCTS2-21

Value Set resolution fails when a value set name is more than a particular number of characters.

LEXEVSCTS2-22Upgrade to CTS 2 1.1 framework

N/A
LEXEVSCTS2-29Adjust Landing and Service pages in the LexEVS CTS2 service applicationLexEVS 6.2 Design Document - Detailed Design - Adjust Landing and Service pages in the LexEVS CTS2 service application

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- entity search should return only active concepts by defaultN/A

 

 

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