NIH | National Cancer Institute | NCI Wiki  

Versions Compared

Old Version 1

changes.mady.by.user Safran, Tracy (NIH/NCI) [C]

Saved on

compared with

New Version Current

changes.mady.by.user Safran, Tracy (NIH/NCI) [C]

Saved on

Key

  • This line was added.
  • This line was removed.
  • Formatting was changed.

...


SYSTEMS
Systems

Discussion Points:

    • Reiteration of Spring Vulnerability for all LexEVS dependent applications on Prod, Stage.
      • ON qa. 
    • CTS2 QA - server logs have too much data. 
      • Mikol reran scan. Still trying to reproduce resultsRedirected all errors thrown into a controlled Spring framework
    • Lexevs system test - need ncimvn/../public to pull newer spring-boot
    • Jenkins having issues running Java8
      • Needed reconfiguration for NCI Meta, CTS2 and Report Writer
      • Still need to test other applications
      • Implication for the future
      New QA2 services pointed to database on old QA server.   
      • Needs repointed to ncidb-q352 
      • Ticket needed?

Decision Points:


LEXEVS UPDATES

LexEVS Sprint Status


Current Sprint - Sprint 200 (Nov 24 – Dec 8 2022)

16X237 Agile Development - Sprint Status#16X237AgileDevelopmentSprintStatus-Sprint199
  • Activities
    • LexEVS CTS2 Service - on QA. 
    • Report Writer - Working on Whitelabel error page - testing on Exporter - On Dev
    • Vue3 Updates for Report Exporter 
    • Working on updating browser for Spring 5 - on dev

Metathesaurus issue

  • Mayo working on extension and patch.
  • extension and patch shared.
    • Need conformation of working on QA
  • Tracy and Scott - able to do queries against extension
    • Kim testingOn QA - AppScan back. Request put in for Stage
Future Planning

Discussion Points:

 Planning for Mayo team in the coming fiscal year:

  • Road Map outline
  • Java 8 implications
    • Do code inventory for other dependencies
    • Update to 11 or 17 - TTruong suggested 11.
    • Mark requested to look into this more closely
    • Breakdown of some features and level of risk
    • Roadmap sent out last week - Meeting held Tuesday, 29th


CTS2 Mapping/URI Resolver

Discussion Points:

  • On QA2 . Reviewing appscan
  • Unit tests being updated
  • and QA1

Decision Points:

caDSR Query

Review requirements for caDSR query

  • They have been provided a flat file for NCIt
  • Still waiting on full requirements for additional terminologies
  • Ticket to be able to query MedDRA and RadLex
  • Mark to contact caDSR team next weekNot scheduled yet, needs to identify principals

Statistics Dashboard

Discussion Points: 

  • Metrics due next weeksent out for November 
  • Status report should be sent out today
  • Financial report likely Dec 8

Decision Points:

Comparison/Mapping Tool

Discussion Points:

Need to plan requirements meeting and prioritization.
part of RoadMap

  • Probably not starting until a few months into 2023

Decision Points:

EVS transition to virtual machines

Discussion Points:

  • Server Migration 2021
    • Stage - goal to finish QA2 first. 
      • Instance of VM instantiated. Needs configuration
    • Meeting occurred. Server updated. Status
      • Term suggestion status - Chuck to check on this
      • QA2 ready for switch over with exception of term-suggestion

Decision Points:

Report Exporter

Discussion Points:

  • Tomcat and Spring Vulnerability noted on the Report Exporter
    • Whitelabel error fixed 
    • Code completed. Being tested on QADev
    • Working on QA deployment
    • Adjustment needed to Whitelabel page per QA report
      • Landing page needs adjusted. 
  • ATO expired earlier this year (Authorization to Operate)
  • Mark meeting with Cole on Nov 30 (today)
    • New meeting for MEME and RE to be scheduled
  • Working on update to Vue3 (JavaScript Framework).
    • ~ 2 month - on week 7 of estimated 8 -
      • delayed due to high priority white label error work 
      • 3 different phases
        • Dependencies updated - complete
        • Squashing errors generated from update - complete?
        • Unit testing
          • bug squashing from this
    • Looking at updating beyond Java 8

Decision Points:

AWS Cloud to be in Separate Account

Discussion Points

  • No Response as of yet

Decision Points:

Team Absences


Mayo Team 

MSC

Leidos 

Systems - Chuck out week of 28th 


EVS SERVICE AND ARCHITECTURE GROUP UPDATES
EVS Service and Architecture Group

Discussion Points:

  • Issue on Prod with Metathesaurus hierarchies - HIGH PRIORITY
    • The issue is related to an API callMetabrowser extension. Related to XML parsing. XSD no longer available from Mayo domain
  • Missing on Mayo side - working channels to get it restored
    • Extension modified to not rely on external URLs, working on testing

    • lbPatch created for similar xsd issues, includes extension code.
    • On QA server, metabrowser itself being tested
      • properties-extension - similar issue to metabrowser-extension but limited in scope
    • Have not seen any outward expression of this error in terms browser, but still searching
      • Working on fix to come after metabrowser-extensionno impact, no longer used

    Decision Points:


    		DATA UPDATES
    Data

    Discussion Points: 

    • 22.11d on Prod today
    • Monthly vocabs being worked on and should be deployed next weekNCIt processing started - DataQA expected on Friday

    Decision Points:


    BROWSER UPDATES

    Browser

    Discussion Points: 

    • Latest tag on Prod with relationships display fixMeta request in for Stage

    Decision Points: 


    QA UPDATES

    QA

    Discussion Points:  (see chart)

    • tag for NCIm tested on QA
    • Monthly NCIt verified on S and P
    • Report Exporter being deployed on QA, still on Dev
    • CTS2 deployed for testing on QA
    • 22.11b on RestAPI complete and on Stage
    • Report Exporter active testing and waiting on a fix
    • CTS2 security patch waiting on error page fix

    Decision Points: 



    		TERMINOLOGIES LIFECYCLE REPORT

    Terminology Updates and Schedule 

    Discussion Points: 

    Decision Points: 

    Mark Benson TPM UpdateLooking for a place to host project tracking spreadsheet.

    LexEVS Spring Migration Progress

    ...

    050605060506

    Vocabulary Name

    Local Name

    Version

    Arrival Date

    Loaded to data-qa DB

    Date to Stage

    Date to Production

    Vocabulary Name in LexBIG

    Short Name

    Version identifier

    Date the vocabulary arrived for processing

    		Has the vocabulary been loaded to the data-qa database?

    Approximate date the vocabulary version is scheduled to move to staging

    Approximate date the vocabulary version is scheduled to move to production

    NCI ThesaurusNCIt22.11d11/28/2022yes12/06/2212/07/22
    NCIt-HGNCNCIt-HGNCNov202211/28/2022yes12/06/2212/07/22
    SwissProtSwissProtNov202211/28/2022yes12/06/2212/07/22
    ChEBIChEBI




    GOGO




    HGNCHGNC




    QA Schedule and Status

    see QA Scheduling and Status

    ...