 |
Page History
...
- If you have a read-only account, you can view, print, or export sample information. For details, refer to (link TBD).
- If you have a curator account associated with an existing sample, you can also add, edit, or delete information in that sample.
This chapter includes the following topics. (TBD: I might split this page into multiple pages, one page for each topic.)
| Table of Contents | ||||
|---|---|---|---|---|
|
...
You can view information in an existing sample.
Search for the sample, as described in Managing Samples in caNanoLab. The Sample Search Results page appears.
In the row for the sample you want to view, click View. The Sample page appears.
- In the Navigation Tree, click Synthesis. The Sample (sample name) Synthesis page appears.
- Select the tab for the category of information you want to view (Materials, Functionalization, or Purification), or remain on the default tab (All).
- To print the information, click Print at the top right of the page.
- To export the information to a spreadsheet, click Export at the top right of the page.
| Info |
|---|
To export all sample information to JSON or XML, refer to Managing Samples in caNanoLab. |
Adding, Editing, or Deleting Synthesis Information in a Sample
- - 2021-07-19.
- If
...
- you have a curator account associated with an existing sample, you can
...
Search for the sample, as described in Managing Samples in caNanoLab. The Sample Search Results page appears.
In the row for the sample you want to edit, click Edit. The Update Sample page appears.
In the Navigation Tree, click Synthesis. The Sample (sample name) Synthesis page appears.
Select the tab for the category of information you want to add or edit (Materials, Functionalization, or Purification), or remain on the default tab (All).
To add or edit an item, click Add or click Edit next to that item. The Add page or Edit page for that item appears. For details, refer to the following topics: (links TBD)
- To delete an item, click Edit next to that item. The Edit page for that item appears. Click Delete. The system moves the deleted item to the sample archive for historical purposes.
| Info |
|---|
| If you are logged in and an Add or Edit button is not available, you have read-only access to the data. |
Adding or Editing Synthesis Materials in a Sample
...
In the Materials panel, click Add and fill in the following information.
...
Select the type of material comprising this nanomaterial (required).
...
(TBD: This panel is similar to composition, but Dev GUI doesn't have PubChem ID field. Is that intentional?)
...
Next to Inherent Functions, click Add to expand the panel. An inherent function is the characteristic behavior of a sample that results from the chemical and physical composition and properties of the entity. For details, refer to (link TBD).
...
Adding or Editing Synthesis Functionalization in a Sample
...
In the Functionalization Materials panel, click Add and fill in the following information:
...
Select the type of material comprising this nanomaterial (required).
...
- also add, edit, or delete information in that sample.
This chapter includes the following topics.
| Page Tree | ||||
|---|---|---|---|---|
|
...
(TBD: This panel is similar to composition, but Dev GUI doesn't have PubChem ID field. Is that intentional?)
...
Next to Inherent Functions, click Add to expand the panel. An inherent function is the characteristic behavior of a sample that results from the chemical and physical composition and properties of the entity. For details, refer to (link TBD).
...
Adding or Editing Synthesis Purification in a Sample
...
Fill in the information as described in the following table:
...
Fill in the general information about the purification.
Select a Purification Type. (TBD: What guidance can we provide here for choosing interim or final?)
Select a Protocol. (TBD: In the Dev tier, no values show up in this drop-down list for me. Do we need to provide guidance for choosing a value?)
Specify the Yield. (TBD: What guidance can we provide here for specifying a value?)
...
Fill in the design and methods information about the purification.
In the Design and Methods Description field, enter a description for the purification design and methods.
Info title Adding extra lines If you include an extra line between text in the Design and Methods Description, the line separation is preserved when you save or update the purification information.
- Next to Technique and Instruments, click Add to expand the panel. For details on specifying techniques and instruments used to derive the data, refer to (link TBD).
...
Click Add to expand the panel. Add data findings and supporting documentation relating to the purification. Import as many .csv files as you wish or add derived data manually. For details, refer to (link TBD).
...
Click Add to expand the panel. (TBD: On the Dev tier, nothing happens when I click Add in the purification Files panel.) Add supporting documentation relating to the purification. Import as many files as you wish. For details, refer to (link TBD).
...
Defining Inherent Functions
You can add inherent functions to a sample. (TBD: You can add as many as you wish?)
To add each function:
...
Fill in the following information.
...
Defining Purification Techniques and Instruments
You can add purification techniques and instruments to a sample. (TBD: You can add as many as you wish?)
To add each technique:
...
Fill in the following information.
...
Technique*
...
Adding Data Findings to Synthesis Purification
You can add purification data findings to a sample. (TBD: You can add as many as you wish?)
To add each finding:
- On the Add or Edit page for synthesis purification of a sample, expand the Finding panel, as described in (link TBD).
- Under Data and Conditions, add findings such as laboratory conditions, pH, or temperature. You can add data manually or you can import as many .csv files as needed. (TBD: May I have a sample CSV file to import, to test these instructions?)
To import a file of data values
Save a spreadsheet of data values to a csv (comma-separated value) file.
Click Import csv. Select the data file and follow the prompts to add it. The system adds columns and data under Data and Conditions.
To add the data values manually
Specify the number of columns and rows for the matrix, and click Update.
Add the data values to the rows.
Whether you imported values or added values manually, you can preface each data value with one of the following: Maintain the default, equal to (=), or select greater than (>), less than (<), or infinity (approximate). (TBD: On the Dev tier, these drop-down lists are empty.)
- To define a column, click an underlined column heading. The Column Definition panel appears.
- Select a Column Type, Datum or Condition.
Select a Column Name or select other and add a new one. You can add up to three cell viability Column Names, including cell viability, cell viability B, and cell viability C. You can further identify the column with the Column Value Type.
For Column Type Datum, (Column Name options TBD: What column types are available for each column name?).
For Column Type Condition, (Column Name options TBD: Same table as for Characterization?).
To further identify a column, select a Column Value Type. Once the column information is saved, the Column Type is shown in parentheses after the Column Name, such as cell viability (mean). (TBD: In Dev tier, for condition, no values show up in this drop-down list for me.)
- Select a Column Value Unit, or select other and add one.
If you want the same value to fill all rows in a column, add a Constant Value. For Column Value Type, boolean, enter a Constant Value of 1 for true and 0 for false.
Click Save. The system updates the columns. If needed, click Set Column Order to change the order of the column headings in the matrix.
- Click Save in the Finding panel.
Adding Supporting Documents to a Sample
You can add supporting documents to a sample. You can add as many files as you wish.
To add each file
...
- For Upload, click Choose File. Browse to the file and select it.
- Otherwise, enter the file's URL where the document is located.
...
- Select the File Type (required): Document, Graph, Image, Movie, PDF, or Spreadsheet.
- Enter the File Title (required).
- Specify Keywords to associate with the file.
- Enter a Description of the file or additional information.
...
