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{panel:title=Documentation Table of Contents}
* [Documentation Main Page|https://wiki.nci.nih.gov/x/hC5yAQ]
* [Creation of the Cancer Gene Index|https://wiki.nci.nih.gov/x/DS9yAQ]
* [Data, Metadata, and Annotations|https://wiki.nci.nih.gov/x/zC1yAQ]
* [Cancer Gene Index Gene-Disease and Gene-Compound XML Documents|https://wiki.nci.nih.gov/x/8i1yAQ]
* [caBIO APIs|https://wiki.nci.nih.gov/x/7zByAQ]
* [Cancer Gene Index Shared Parsed Data and Code|https://wiki.nci.nih.gov/x/hzJyAQ]
* [caBIO Portlet Templated Searches|https://wiki.nci.nih.gov/x/0C9yAQ]
* [caBIO Home Page|https://wiki.nci.nih.gov/x/TTByAQ]
* [caBIO iPhone Application|https://wiki.nci.nih.gov/x/VDFyAQ]
* [caBIO Portlet Simple Searches|https://wiki.nci.nih.gov/x/-TByAQ]
* [Glossary|https://wiki.nci.nih.gov/x/si9yAQ]
* [Credits and Resources|https://wiki.nci.nih.gov/x/yS9yAQ]
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{tip:title=Need Additional Help?}If you need additional support, please contact [Application Support|mailto:ncicb@pop.nci.nih.gov].{tip}
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h1. Search for Biological Entities Compound Query Overview
The [caBIO Home Page Search for Biological Entities|http://cabioapi.nci.nih.gov/cabio43/Home.action] tool is a flexible tool, and the worklow presented here is just one of the ways that it can be used. These steps illustrate how to query a specific type object associated with the Cancer Gene Index to identify those with attributes that are associated with your compound search term.
h1. Identifying a Compound Search Term
In order to search for genes that are associated with a given compound, you must first have either an NCI Thesaurus term or concept code for it. To find both of these values, navigate to the [NCI Thesaurus web page|http://nciterms.nci.nih.gov/]. Select the {{Contains}} radio button so that the search will return any terms that contain your keywords (1). Enter your keyword/s (2), and click the Search button (3). If you cannot find the term for which you were looking, click on the Contact Us link at the bottom of the web page (4).
{tip:title=Search Tip}You may use the question mark wild card character after your search term (for example, "etoposide?") if you choose to use {{Exact Match}} or {{Begins With}}. {tip}
!AgentSearchPage.jpg|alt="Agent Search Page"!
{info:title=Note}Although the Cancer Gene Index refers to pharmacological substances as "compounds" or "drugs," the NCI Thesaurus uses the term "agent."{info}
Select the desired result from the list of retrieved thesaurus terms in order to view the term's concept page. You may use either the Preferred Term (1) or the Thesaurus Code (2) with the Search for Biological Entities tool.
{tip:title=Tip}The NCI Thesaurus Code for a concept is identical to its EVS Identifier.{tip}
If you would like to uncover compound ontologies in order to query the Search Biological Entities functionality for parent and child concepts as well, you may find the names and NCI Thesaurus Codes for the immediate parent or child concepts by clicking on the Relationships tab (blue box). Alternatively, you may view parent, sister, and child concepts by clicking View in Hierarchy (green box).
!AgentHierarchy.jpg|alt="Agent Hierarchy"!
h1. Using the Search for Biological Entities tool
To search for genes that are associated with a particular compound, in the Domain Packages tree (1) expand the {{
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