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SYNOPSIS: |
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Bioconductor is a widely-used collection of R packages for the statistical analysis and comprehension of high-throughput genomic data. |
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Bioconductor has strengths in sequence (RNA-seq, ChIP-seq, called variants, ...) and microarray (expression, methylation, copy number, ...) analysis, as well as significant facilities for flow cytometry, proteomics, and many other |
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omics domains. The breadth of available facilities, coupled with principles of interoperability and reproducibility, make |
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Bioconductor an ideal platform for integrative approaches to cancer genomics. This presentation outlines technical aspects of recent and forthcoming facilities to enable integrative cancer genomic analysis in |
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Bioconductor. We discuss our own work to enable routine integration of large-scale consortium (e.g., ENCODE, Ensembl), annotation into analysis work flows, development within Biocondctor of facilities to manage multiple-assay experiments, and approaches to scaling R's in-memory model to large scale data sets. The presentation concludes with a brief overview of integrative approaches contributed to |
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Bioconductor by our international contributors. |
BIO:
Dr. Morgan earned his undergraduate and master degrees in Botany at the University of Toronto. Dr. Morgan's Ph.D., from the University of Chicago, involved the evolutionary consequences of frequency-dependent selection and of multilocus deleterious mutation.
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Date: Wednesday, April 13, 2016
Time: 11 AM – 12 PM ET
WebEx: https://cbiit.webex.com/cbiit/onstage/g.php?MTID=eb428ed1c9e606eea2b7cc417caf48333
Event number: 736 916 640
Event password: $Peakerseries16
You are invited to listen to Dr. Morgan's presentation in Room 2E908 in the NCI Shady Grove Building on Medical Center Drive or via WebEx.
Presentation: A screen cast of the presentation will be available for viewing after the event on the NCI CBIIT Speaker Series YouTube Playlist
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Widget Connector url https://www.youtube.com/watch?v=E0UkIijsOdw&list=PLYKy4VbxNln5j89ESpYBVUkeFDbmQwxYG&index=13
About the NCI CBIIT Speaker Series:
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