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NCI Protégé
...
1.4.0
...
Release
...
Notes
| Panel | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
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{
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National Cancer Institute Center for Bioinformatics
Protege 1.4.0
...
Release
...
Notes
...
15
...
Sep
...
2009
...
Product
...
Changes
...
The
...
objective
...
of
...
this
...
Protégé
...
1.4
...
release
...
is
...
to
...
harden
...
the
...
NCIEditTab
...
plug-in
...
for
...
Protégé
...
so
...
the
...
project
...
can
...
go
...
into
...
an
...
operation
...
and
...
maintenance
...
mode
...
of
...
operation,
...
in
...
lieu
...
of
...
actively
...
developing
...
releases
...
of
...
the
...
product
...
containing
...
new
...
features.
...
Protégé
...
1.4
...
is
...
planned
...
to
...
be
...
the
...
last
...
major
...
release
...
of
...
the
...
NCIEditTab
...
Protégé
...
plug-in.
...
New
...
Feature
...
Highlights
...
Although
...
much
...
of
...
the
...
work
...
in
...
1.4
...
involved
...
refactoring
...
existing
...
code
...
to
...
simplify
...
maintenance
...
and
...
enhance
...
performance
...
in
...
various
...
spots,
...
a
...
number
...
of
...
new
...
features
...
have
...
been
...
introduced
...
in
...
various
...
areas.
...
- Searching:
...
- The
...
- ability
...
- to
...
- use
...
- negation
...
- (NOT
...
- operator)
...
- in
...
- queries
...
- in
...
- the
...
- LQT
...
- Searching:
...
- Lucene
...
- Match,
...
- Property
...
- Present,
...
- and
...
- Property
...
- Absent,
...
- added
...
- to
...
- the
...
- list
...
- of
...
- available
...
- search
...
- types
...
- in
...
- the
...
- LQT
...
- (which
...
- already
...
- included
...
- Exact,
...
- Contains,
...
- Starts
...
- With,
...
- Ends
...
- With,
...
- and
...
- Sounds
...
- Like).
...
- The
...
- Lucene
...
- Match
...
- allows
...
- queries
...
- to
...
- be
...
- constructed
...
- with
...
- multiple
...
- query
...
- strings
...
- separated
...
- by
...
- boolean
...
- operators
...
- (NOT,
...
- AND),
...
- thereby
...
- extending
...
- the
...
- range
...
- and
...
- flexibility
...
- of
...
- lexical
...
- queries
...
- that
...
- can
...
- be
...
- conducted
...
- in
...
- the
...
- LQT.
...
- Property
...
- Restrictions:
...
- a
...
- simple
...
- GUI
...
- dialog
...
- for
...
- creating
...
- restrictions
...
- has
...
- been
...
- added
...
- to
...
- replace
...
- the
...
- Role
...
- expression
...
- dialog
...
- for
...
- simple
...
- restrictions;
...
- this
...
- is
...
- essentially
...
- the
...
- dialog
...
- used
...
- in
...
- the
...
- OWLClasses
...
- tab
...
- of
...
- Protege.
...
- The
...
- Role
...
- expression
...
- dialog
...
- now
...
- verifies
...
- that
...
- expressions
...
- have
...
- a
...
- valid
...
- Role
...
- Group
...
- format.
...
- Export
...
- of
...
- resultsets
...
- from
...
- the
...
- LQT
...
- for
...
- reports
...
- in
...
- a
...
- spreadsheet
...
- format
...
- now
...
- includes
...
- Superclasses.
...
- Reports
...
- can
...
- now
...
- also
...
- be
...
- generated
...
- for
...
- concepts
...
- that
...
- are
...
- input
...
- as
...
- a
...
- list
...
- of
...
- codes.
...
- Hence,
...
- the
...
- mechanisms
...
- for
...
- generating
...
- a
...
- resultset
...
- for
...
- outputting
...
- reports
...
- includes
...
- concepts
...
- specified
...
- a)
...
- from
...
- lexicographic
...
- searches
...
- (in
...
- the
...
- LQT
...
- tab),
...
- b)
...
- by
...
- their
...
- tree
...
- placement
...
- (Report
...
- Writer
...
- sub-tab),
...
- and
...
- c)
...
- by
...
- a
...
- list
...
- of
...
- codes
...
- (also
...
- from
...
- the
...
- Report
...
- Writer
...
- sub-tab).
...
- Batch
...
- Edits
...
- /
...
- Batch
...
- Loads:
...
- validation
...
- of
...
- complex
...
- properties
...
- and
...
- enumerations
...
- in
...
- property
...
- values.
...
Behavior
...
to
...
be
...
Aware
...
Of
...
A
...
number
...
of
...
GForge
...
items
...
were
...
created
...
that
...
need
...
additional
...
comment.
...
With
...
the
...
exception
...
of
...
GForge
...
items
...
23284,
...
23276,
...
and
...
23057
...
(see
...
below),
...
which
...
will
...
be
...
addressed
...
in
...
1.4.1,
...
the
...
items
...
listed
...
here
...
have
...
been
...
closed.
...
- 19949
...
- Return
...
- of
...
- 60,082
...
- results
...
- for
...
- a
...
- search
...
Searching
...
complex
...
properties
...
or
...
the
...
rdf:ID
...
(:NAME)
...
with
...
specific
...
Contains
...
queries
...
will
...
result
...
in
...
the
...
entire
...
vocabulary
...
being
...
returned,
...
as
...
if
...
a
...
single
...
wildcard
...
character
...
was
...
the
...
query
...
string.
...
This
...
is
...
because
...
complex
...
properties
...
contain
...
embedded
...
XML
...
and
...
the
...
rdf:ID
...
contains
...
a
...
full
...
URI.
...
For
...
instance,
...
the
...
following
...
searches
...
will
...
return
...
the
...
entire
...
NCIt
...
vocabulary
| Code Block |
|---|
} entity searched query string FULL_SYN& name FULL_SYN& group FULL_SYN source FULL_SYN > :NAME / :NAME : :NAME http :NAME Thesaurus :NAME owl {code} |
Similarly,
...
a
...
Contains
...
search
...
for
...
"reviewer"
...
or
...
"source"
...
in
...
DEFINITION
...
will
...
return
...
all
...
the
...
concepts
...
with
...
a
...
DEFINITION
...
property.
...
By
...
the
...
same
...
token,
...
doing
...
Exact
...
searches
...
on
...
the
...
above
...
properties
...
and
...
the
...
:NAME
...
will
...
fail
...
unless
...
the
...
complex
...
property
...
value
...
or
...
URI
...
is
...
entered
...
in
...
its
...
entirety.
...
- 23284
...
- Batch
...
- edit
...
- to
...
- delete
...
- associations
...
- needs
...
- full
...
- association
...
- rdfs:ID
...
This
...
is
...
deemed
...
an
...
inconsistency
...
in
...
behavior
...
and
...
is
...
slated
...
for
...
a
...
fix
...
in
...
1.4.1.
...
For
...
now,
...
editors
...
need
...
to
...
be
...
aware
...
that
...
deleting
...
associations
...
in
...
batch
...
requires
...
that
...
the
...
association's
...
rdf:ID
...
be
...
entered
...
in
...
its
...
entirety.
...
- 19970
...
- Batch
...
- edit
...
- records
...
- with
...
- sequential
...
- escaped
...
- characters
...
- fail
...
Exporting
...
a
...
txt
...
file
...
containing
...
escapable
...
characters
...
from
...
Excel
...
results
...
in
...
Excel's
...
escape
...
character,
...
the
...
double-quote,
...
being
...
exported
...
also.
...
Files
...
derived
...
from
...
these
...
exports
...
used
...
for
...
a
...
batch
...
edit
...
will
...
fail.
...
The
...
files
...
need
...
to
...
be
...
cleaned
...
up
...
by
...
searching
...
and
...
fixing
...
the
...
misplaced
...
double-quotes.
...
- 21973
...
- Browser
...
- does
...
- not
...
- refresh
...
- after
...
- bulk
...
- load
...
To
...
increase
...
the
...
performance
...
of
...
the
...
bulk
...
load,
...
the
...
event
...
listeners
...
are
...
turned
...
off
...
during
...
the
...
batch
...
load
...
(and
...
edit).
...
This
...
is
...
by
...
design
...
and
...
results
...
in
...
the
...
behavior
...
listed
...
in
...
GForge.
...
- 21569
...
- Bulk
...
- Load
...
- prevents
...
- others
...
- from
...
- moving
...
- around
...
- in
...
- Protege
...
This
...
applies
...
to
...
GForge
...
21632
...
as
...
well
...
(Batch
...
load
...
of
...
new
...
concepts
...
freezes
...
GUI
...
for
...
other
...
editors).
...
Although
...
issues
...
that
...
affected
...
the
...
performance
...
of
...
batch
...
loads
...
and
...
edits
...
were
...
examined
...
and
...
their
...
effects
...
minimized
...
in
...
the
...
1.4.0
...
release,
...
changes
...
in
...
the
...
edit
...
filters
...
to
...
satisfy
...
QA
...
requirements
...
canceled
...
out
...
the
...
performance
...
increase.
...
As
...
discussed
...
in
...
other
...
venues,
...
batch
...
edits
...
and
...
batch
...
loads
...
need
...
to
...
be
...
dealt
...
with
...
through
...
guidelines.
...
As
...
of
...
this
...
time,
...
batch
...
loads
...
are
...
being
...
restricted
...
to
...
specific
...
time
...
periods
...
of
...
the
...
day
...
after
...
editors
...
have
...
been
...
notified.
...
Batch
...
edits
...
can
...
be
...
done
...
without
...
this
...
restriction
...
but
...
notification
...
must
...
be
...
sent
...
out
...
so
...
that
...
a)
...
competing
...
batch
...
edits
...
are
...
not
...
done
...
at
...
the
...
same
...
time,
...
b)
...
editors
...
are
...
aware
...
that
...
there
...
might
...
be
...
an
...
increased
...
lag
...
time
...
in
...
Protege's
...
response
...
due
...
to
...
the
...
ongoing
...
batch
...
edit.
...
- 22004
...
- Error
...
- message
...
- appears
...
- during
...
- a
...
- bulk
...
- edit
...
- when
...
- there
...
- is
...
- an
...
- error
...
- in
...
- the
...
- input
...
- file.
...
- The
...
- bulk
...
- edit
...
- freezes
...
- until
...
- the
...
- OK
...
- button
...
- on
...
- the
...
- error
...
- message
...
- is
...
- pressed.
...
This
...
issue
...
has
...
to
...
do
...
with
...
concurrent
...
edits
...
being
...
done
...
by
...
other
...
editors
...
on
...
the
...
same
...
classes
...
that
...
are
...
being
...
batch-edited.
...
The
...
warning
...
messages
...
are
...
the
...
correct
...
behavior,
...
and
...
can
...
only
...
be
...
prevented
...
if
...
the
...
classes
...
are
...
not
...
edited
...
by
...
more
...
than
...
one
...
person
...
(or
...
batch
...
edit)
...
at
...
the
...
same
...
time.
...
- 17711
...
- Missing
...
- warning
...
- message
...
- to
...
- the
...
- user:
...
- causes
...
- protege
...
- to
...
- freeze.
...
On
...
selecting
...
a
...
"hasValue"
...
modifier
...
when
...
owl:Thing
...
is
...
selected
...
in
...
the
...
class
...
widget,
...
Protégé
...
appears
...
to
...
freeze.
...
It
...
is
...
not
...
frozen,
...
the
...
client
...
is
...
loading
...
all
...
the
...
classes
...
into
...
the
...
widget.
...
Editors
...
need
...
to
...
be
...
aware
...
that
...
if
...
"hasValue"
...
is
...
to
...
be
...
used,
...
in
...
the
...
class
...
widget
...
the
...
"class
...
hierarchy"
...
view
...
must
...
be
...
selected,
...
instead
...
of
...
the
...
"instance"
...
view.
...
- 23276
...
- In
...
- Copy
...
- pane,
...
- the
...
- Preferred_Name
...
- and
...
- PT
...
- are
...
- automatically
...
- sync'ed
...
- with
...
- an
...
- improper
...
- AQ
...
A
...
warning
...
message
...
is
...
displayed
...
on
...
changing
...
a
...
PT
...
or
...
PN,
...
e.g.
...
like
...
when
...
an
...
AQ
...
is
...
created.
...
If
...
the
...
editor
...
does
...
not
...
wish
...
to
...
change
...
the
...
PT/PN,
...
canceling
...
out
...
of
...
the
...
action
...
will
...
restore
...
the
...
concept
...
to
...
its
...
initial
...
state
...
and
...
other
...
edits
...
will
...
also
...
be
...
lost
...
and
...
they'll
...
need
...
to
...
be
...
recreated.
...
This
...
GForge
...
issue
...
is
...
is
...
slated
...
for
...
modification
...
in
...
protege
...
1.4.1.
...
For
...
the
...
time
...
being,
...
editors
...
need
...
to
...
be
...
aware
...
of
...
this
...
behavior.
...
- 23057
...
- Lucene
...
- indexing
...
- failure
...
- with
...
- database
...
- data
...
Searches
...
in
...
the
...
LQT
...
with
...
"lucene
...
match"
...
might
...
yield
...
incorrect
...
results
...
if
...
multiple
...
concepts
...
exist
...
where
...
the
...
rdf:ID
...
(the
...
class
...
name)
...
only
...
differs
...
in
...
case,
...
e.g.
...
"tocopherol"
...
and
...
"Tocopherol".
...
The
...
observed
...
incorrect
...
result
...
is
...
that
...
only
...
one
...
class
...
is
...
returned
...
instead
...
of
...
both.
...
This
...
is
...
due
...
to
...
a
...
fetch
...
action
...
on
...
the
...
database
...
being
...
done
...
in
...
a
...
case-insensitive
...
manner.
...
This
...
GForge
...
issue
...
is
...
slated
...
for
...
modification
...
in
...
Protégé
...
1.4.1.
...
Editors
...
need
...
to
...
be
...
aware
...
that
...
under
...
these
...
conditions
...
"lucene
...
match"
...
searches
...
(and
...
"sounds
...
like")
...
won't
...
be
...
accurate.
...
List
...
of
...
New
...
Features
...
and
...
Bug
...
Fixes
...
3954&
...
Merging
...
two
...
concepts
...
with
...
incoming
...
roles
...
should
...
not
...
result
...
in
...
duplicates
...
5967
...
New
...
concepts
...
go
...
to
...
bottom
...
of
...
the
...
sibling
...
list,
...
rather
...
than
...
alphabetical
...
7519
...
Changes
...
ontology
...
in
...
database
...
8302
...
Need
...
automatic
...
cursors
...
in
...
filler
...
windows
...
8407
...
Enter
...
key
...
does
...
not
...
close
...
confirmation
...
message
...
box
...
-
...
-
...
duplicate
...
of
...
#8611
...
8590
...
Allow
...
user
...
to
...
modify
...
Superclasses
...
in
...
Copy
...
tab
...
8604
...
Improve
...
load
...
time
...
of
...
Edit
...
tab
...
8609
...
Retain
...
frame
...
sizes
...
after
...
switching
...
tabs
...
8610
...
Auto-select
...
the
...
previously
...
selected
...
Thesaurus
...
8629
...
Provide
...
ability
...
to
...
disable
...
right
...
click
...
menu
...
options
...
from
...
main
...
tree
...
10811
...
Restriction
...
change
...
frozen
...
out
...
11018
...
Catch
...
client
...
exception
...
when
...
server
...
is
...
down
...
or
...
being
...
bounced
...
11110
...
PROMPT-
...
Table wiew
...
does
...
not
...
have
...
ontologies'
...
names
...
11114
...
PROMPT
...
-
...
'Source
...
knowledge
...
bases'
...
window
...
inconsistency
...
11115
...
PROMPT
...
-
...
'Table
...
View'
...
crashes
...
after
...
visting
...
'Show
...
sources'
...
window
...
11891
...
deleting
...
classes
...
can
...
cause
...
spurious
...
values
...
showing
...
up
...
in
...
class
...
browser
...
12358
...
PROMPT
...
-
...
Reject
...
button
...
in
...
Tree
...
view
...
produces
...
error
...
message
...
to
...
the
...
console
...
12815
...
Track
...
the
...
last
...
modeler
...
who
...
modified
...
the
...
assignment
...
12817
...
Creating
...
new
...
workflow
...
assignments
...
12935
...
text
...
is
...
not
...
trimmed
...
13613
...
Does
...
not
...
change
...
status
...
of
...
workflow
...
to
...
Updated
...
when
...
manager
...
edits
...
a
...
concept
...
13848
...
Allow
...
search
...
on
...
null
...
in
...
AQP
...
14404
...
If
...
character
...
in
...
slot
...
matches
...
delimiter
...
then
...
export
...
misaligns
...
values
...
14480
...
Make
...
NCIEdit
...
subtabs
...
configurable
...
14786
...
Focus
...
jumps
...
to
...
new
...
project
...
after
...
final
...
row
...
deleted
...
14805
...
Have
...
batch
...
load
...
verify
...
all
...
STYs
...
are
...
correct
...
when
...
loading
...
15003
...
NCIWorkflow
...
-
...
reorder
...
columns
...
15174
...
No
...
copy
...
option
...
on
...
right
...
click
...
menus
...
for
...
Split
...
function
...
15175
...
(SEE
...
COMMENTS)
...
Invalid
...
classification
...
findings
...
if
...
premerge
...
or
...
pre-retire
...
exists
...
15381
...
Adding
...
restrictions
...
and
...
the
...
Advanced
...
Query
...
15493
...
Default
...
Task
...
Description
...
of
...
new
...
Workflow
...
assignment
...
has
...
typo
...
15664
...
Assumption
...
of
...
role
...
groups
...
15752
...
In
...
copy
...
pane,
...
modify
...
restriction
...
does
...
not
...
remember
...
filler
...
value
...
15889
...
Merging
...
two
...
concepts
...
with
...
incoming
...
properties
...
should
...
not
...
result
...
in
...
duplicates
...
15944
...
PROMPT:
...
namespaces
...
in
...
Table
...
view
...
16012
...
User
...
is
...
able
...
to
...
accept
...
changes
...
that
...
classifier
...
suggest
...
for
...
inconsistant
...
class
...
-
...
leads
...
to
...
issue
...
16120
...
Addition
...
of
...
a
...
date
...
tag
...
to
...
retired
...
concepts
...
and
...
to
...
merged
...
concepts
...
16140
...
Copy
...
Tab
...
allows
...
save
...
of
...
class
...
with
...
duplicate
...
restrictions
...
16152
...
Display
...
of
...
NCIEditTab
...
Build
...
Version
...
16161
...
Comment
...
on
...
the
...
confirmation
...
'OK'
...
box
...
16163
...
Addition
...
of
...
Superclass
...
in
...
Copy/Split/PreMerge
...
-
...
allow
...
'defining'
...
superclass
...
16533
...
Unnecessary
...
warning
...
when
...
leaving
...
Copy
...
or
...
Edit
...
pane
...
16775
...
Simplify
...
adding
...
a
...
role
...
16873
...
History
...
records
...
created
...
on
...
classification
...
in
...
client--server
...
mode
...
16887
...
Add
...
definition
...
field
...
to
...
window
...
when
...
cloning
...
a
...
class
...
16926
...
:ROLE
...
concrete
...
-
...
Prompt
...
bug
...
fix
...
16983
...
Duplicates
...
Items
...
displayed
...
on
...
the
...
main
...
menu.
...
17128
...
Changes
...
tab
...
does
...
not
...
show
...
up
...
after
...
changing
...
the
...
Look
...
and
...
feel.
...
17145
...
Protege
...
freezes
...
after
...
chaning
...
the
...
Look
...
and
...
Feel
...
the
...
second
...
time.
...
17210
...
LQP/AQP
...
-
...
selection
...
and
...
output
...
of
...
superclasses
...
17212
...
LQP/AQP
...
-
...
search
...
for
...
concepts
...
lacking
...
a
...
property
...
value
...
17213
...
Selection
...
criteria
...
for
...
concepts
...
to
...
be
...
exported
...
via
...
LQP/AQP
...
export
...
function
...
17214
...
Report
...
writer
...
-
...
add
...
export
...
function
...
currently
...
in
...
LQP/AQP
...
17450
...
Loss
...
of
...
Concepts
...
form
...
the
...
Hierarchy
...
17570
...
Confusing
...
message
...
to
...
the
...
user
...
when
...
you
...
drag
...
the
...
retiring
...
concept
...
into
...
surviving
...
concepts
...
pane.
...
17760
...
Workflow
...
improvements
...
17777
...
AQP
...
sometimes
...
returns
...
an
...
incomplete
...
result
...
set
...
18116
...
LQT
...
export
...
of
...
results
...
is
...
exporting
...
entire
...
path
...
18163
...
Triple
...
click
...
on
...
Change
...
History
...
causes
...
UnsupportedOperationException
...
18164
...
query
...
in
...
changes
...
tab
...
search
...
box
...
gives
...
'Please
...
enter
...
an
...
expressioin'
...
error
...
18177
...
Incorrect
...
display
...
of
...
LQT
...
search
...
criteria
...
18210
...
User
...
can
...
drag
...
and
...
drop
...
a
...
concept
...
which
...
has
...
not
...
been
...
pre-merged
...
into
...
a
...
merge
...
pane.
...
18232
...
Language
...
should
...
be
...
serialialized
...
as
...
xml:lang
...
attribute
...
18497
...
RuntimeException
...
when
...
you
...
click
...
'Edit
...
form
...
of
...
type...'
...
button
...
on
...
Edit
...
tab
...
18536
...
Batch
...
Load
...
of
...
new
...
concepts
...
interferes
...
with
...
other
...
editors
...
creating
...
concepts
...
18589
...
LQP
...
view
...
class
...
buttons
...
do
...
not
...
appear
...
for
...
class
...
in
...
PATO
...
18599
...
Language
...
display
...
18616
...
Save
...
of
...
concept_history
...
in
...
NCI_DB
...
format
...
after
...
Prompt
...
should
...
be
...
altered
...
or
...
automated
...
18831
...
LQT
...
needs
...
label
...
at
...
bottom
...
to
...
identify
...
protege
...
instance
...
18929
...
A
...
classifier
...
run
...
tags
...
all
...
concepts
...
with
...
protege:inferred
...
properties
...
18930
...
PROMPT
...
tab
...
allows
...
start
...
of
...
compare
...
even
...
when
...
another
...
compare
...
is
...
running
...
18959
...
sort
...
of
...
inferred
...
results
...
panel
...
18961
...
queries
...
in
...
change
...
tab
...
18978
...
frame
...
caching
...
refactoring
...
18981
...
switching
...
subtabs
...
in
...
nciedittab
...
is
...
slow
...
18988
...
Modifications
...
to
...
the
...
reasoning
...
server
...
to
...
support
...
storage
...
plug-ins
...
18989
...
Add
...
context
...
information
...
in
...
reasoner
...
client/server
...
protocol
...
to
...
reject
...
updates
...
to
...
unrelated
...
ontologies
...
18990
...
Reasoner
...
URL
...
as
...
per-project
...
preference
...
(rather
...
than
...
per
...
Protege
...
Server)
...
19000
...
Reduce
...
reasoning
...
time
...
for
...
explanations
...
which
...
include
...
domain
...
or
...
range
...
axioms
...
19024
...
Merge
...
process
...
by
...
GUI
...
changed
...
between
...
1.2.3.25
...
and
...
1.3.0.172
...
19077
...
Not
...
able
...
to
...
Split
...
a
...
concept
...
:RuntimeException
...
19100
...
property
...
tab,
...
can't
...
edit
...
enumerations
...
19165
...
Display
...
in
...
Browser'
...
dialog
...
for
...
editing
...
Unstructured
...
Proposals
...
shows
...
wrong
...
URL
...
19308
...
OWL:Thing
...
can
...
be
...
added
...
as
...
a
...
filler
...
value
...
while
...
adding
...
a
...
restriction
...
or
...
an
...
association
...
19361
...
FULL_SYN
...
with
...
incorrect
...
format
...
cannot
...
be
...
fixed
...
in
...
NCI
...
Editor
...
Edit
...
Tab
...
19499
...
Not
...
able
...
to
...
drag
...
and
...
drop
...
a
...
concept
...
in
...
to
...
Copy,Premerge,preretire,merge
...
and
...
retire
...
pane.
...
19520
...
Project
...
is
...
closed
...
when
...
you
...
check
...
Drag
...
and
...
Drop,
...
while
...
on
...
edit
...
tab.
...
19522
...
Select
...
Named
...
Class
...
does
...
not
...
reappear
...
with
...
a
...
populated
...
window
...
after
...
a
...
search,so
...
OWL:Thing
...
gets
...
added.
...
19722
...
Could
...
add
...
OWL:Thing
...
as
...
a
...
filler
...
value
...
and
...
also
...
as
...
an
...
association.
...
19730
...
Error
...
at
...
save
...
causes
...
loss
...
of
...
all
...
prior
...
edits
...
19734
...
Focus
...
is
...
incorrect
...
after
...
edit
...
of
...
subclass
...
in
...
PreRetire
...
19792
...
LPQ
...
gives
...
duplicate
...
results
...
19826
...
Confirmation
...
box
...
when
...
Preferred_Name
...
is
...
changed
...
19850
...
Changing
...
the
...
Preferred
...
Name
...
in
...
the
...
copy
...
tab
...
does
...
not
...
change
...
the
...
NCI
...
PT
...
19934
...
Partonomy
...
Tree
...
Tab
...
does
...
not
...
work
...
19973
...
Nested
...
Search
...
fails
...
with
...
quantifier
...
'Only'.
...
19985
...
Defined
...
Concepts
...
in
...
Hierarchy
...
Browser
...
not
...
indicated
...
20018
...
During
...
a
...
batch
...
edit
...
a
...
new
...
definition
...
is
...
accepted
...
even
...
without
...
the
...
qualifiers.
...
20120
...
Problems
...
editing
...
a
...
parent
...
20134
...
Exception
...
on
...
switching
...
to
...
the
...
LQT
...
tab
...
from
...
the
...
Report
...
Writer
...
tab
...
20157
...
Couple
...
of
...
classes
...
on
...
the
...
'Select
...
a
...
name
...
class'
...
dialogue
...
are
...
expanded
...
upto
...
2nd
...
node.
...
20170
...
Configurability
...
of
...
Report
...
Writer
...
output
...
20173
...
Cloned
...
concepts
...
have
...
incorrectly
...
diaplayed
...
PN.
...
20318
...
Lucene
...
query
...
tab
...
will
...
not
...
search
...
PATO
...
20323
...
Prompt:
...
NCI
...
Concept
...
History
...
-
...
-
...
management
...
of
...
properties
...
20420
...
Classification
...
failed
...
with
...
a
...
Reasoner
...
error.
...
20478
...
Unwanted
...
Rick-click
...
options.
...
20510
...
Classes
...
in
...
the
...
'Select
...
a
...
named
...
class'
...
dialogue
...
not
...
sorted
...
alphabetically.
...
20512
...
Right
...
click
...
menu
...
options
...
on
...
the
...
class
...
browser
...
can
...
create,
...
delete
...
super
...
classes.
...
20624
...
Concept
...
History
...
plugin
...
of
...
Prompt
...
writes
...
empty
...
string
...
on
...
referencecode
...
20644
...
Case
...
sensitivity
...
when
...
creating
...
a
...
copy.
...
20698
...
Inability
...
to
...
exit
...
merge
...
panel
...
when
...
a
...
non-pre-merged
...
concept
...
is
...
accidentally
...
dropped
...
into
...
merge
...
panel
...
20738
...
Cannot
...
save/accept
...
new
...
child
...
concept
...
proposals
...
imported
...
from
...
SMW
...
20754
...
Add
...
support
...
for
...
associations
...
to
...
merge/retire
...
20914
...
Explanation
...
tab
...
should
...
request
...
one
...
explanation
...
initially,
...
more
...
only
...
on
...
user
...
request
...
20928
...
search
...
invoked
...
from
...
the
...
drop
...
down
...
is
...
missing
...
magnifying
...
glasses
...
20929
...
exporter
...
is
...
single
...
quoting
...
names
...
from
...
browser
...
text
...
21196
...
Lang
...
is
...
not
...
displayed
...
for
...
a
...
full
...
syn
...
or
...
a
...
definition.
...
21271
...
Need
...
to
...
filter
...
property
...
choices
...
so
...
that
...
only
...
valid
...
options
...
are
...
available.
...
21301
...
Right
...
click
...
edit
...
full
...
syn
...
in
...
Copy
...
pane
...
unecessarily
...
prompts
...
warning
...
messagebox
...
21317
...
Empty
...
Definition
...
tags
...
created
...
on
...
the
...
New
...
concept
...
pane
...
of
...
Copy
...
tab.
...
21323
...
Modifying
...
rdfs
...
label
...
does
...
not
...
update
...
PN
...
or
...
PT
...
full_syn
...
21446
...
On
...
the
...
retire
...
pane
...
after
...
clicking
...
retire
...
and
...
before
...
clicking
...
save,
...
a
...
user
...
can
...
add
...
properties
...
to
...
the
...
retiring
...
concept.
...
21474
...
LQP
...
Report
...
inverted
...
the
...
query
...
output
...
21481
...
Copying
...
the
...
Preferred_Name
...
from
...
the
...
main
...
GUI
...
enables
...
the
...
Save
...
button
...
21570
...
Able
...
to
...
edit
...
a
...
Retired
...
Concept
...
in
...
a
...
bulk
...
process
...
21576
...
Invalid
...
Filler
...
Value
...
Errors
...
21578
...
Unusual
...
characters
...
in
...
cloned
...
definition
...
cause
...
blank
...
definition
...
21579
...
Validating
...
complex
...
properties
...
in
...
batch
...
edit
...
21598
...
Multiple
...
confirmation
...
messages
...
after
...
a
...
preretire
...
save
...
21629
...
APQ
...
popup
...
window
...
still
...
not
...
labeled
...
with
...
terminology
...
21630
...
Merge
...
and
...
retire
...
cannot
...
be
...
completed
...
because
...
of
...
protegeinferred:Sub/SuperclassOf
...
21631
...
Clone
...
without
...
DEF
...
gives
...
empty
...
<def-definition>
...
but
...
other
...
qualifiers
...
are
...
present
...
i.e.
...
<def-source>,
...
<Definition_Review_Date>
...
21633
...
Hierarchy
...
not
...
displaying
...
trees
...
in
...
alphabetical
...
order
...
21650
...
Lucene
...
configuration-
...
-
...
minus
...
1
...
value
...
does
...
not
...
function
...
properly
...
21651
...
Explanation
...
Tab
...
not
...
in
...
sync
...
with
...
Hierarchy
...
Browser
...
in
...
NCIEditor
...
tab
...
21689
...
Strange
...
behavior
...
on
...
Preferred
...
Name
...
change
...
21712
...
Editor
...
allows
...
editing
...
of
...
retired
...
concepts
...
21856
...
Explanation
...
server
...
takes
...
over
...
90
...
min
...
to
...
start
...
21896
...
Dollow
...
up
...
bug
...
#21650--Lucene
...
Config
...
setting
...
-1
...
21900
...
If
...
clone
...
a
...
concept
...
with
...
no
...
definition
...
it
...
does
...
not
...
retain
...
the
...
provided
...
one
...
22005
...
Restriction-based
...
queries
...
not
...
working
...
22010
...
carriage
...
return
...
allowed
...
in
...
property
...
field?
...
22021
...
Loss
...
of
...
Concepts
...
form
...
the
...
Hierarchy
...
with
...
bad
...
modeling
...
22027
...
unable
...
to
...
bring
...
concept
...
upto
...
Edit
...
panel
...
after
...
failed
...
BulkEdit
...
22114
...
batch
...
load/edit
...
need
...
to
...
capture
...
EVS
...
History
...
22333
...
BFO
...
concepts
...
with
...
BGT
...
subclasses
...
have
...
duplicate
...
rdfs
...
properties
...
after
...
prompt
...
and
...
file
...
export
...
22400
...
LQT
...
results
...
don't
...
have
...
search
...
criteria
...
appended
...
at
...
the
...
end
...
of
...
the
...
file.
...
22404
...
Batch
...
load
...
causes
...
NPE
...
22723
...
Problem
...
with
...
property
...
creation
...
22856
...
lucene
...
query
...
incorrectly
...
filters
...
properties
...
for
...
search.
...
23143
...
unable
...
to
...
save
...
concept
...
with
...
Def_Curator
...
property
...
23205
...
Concept
...
deleted
...
when
...
trying
...
to
...
replace
...
owl:thing
...
as
...
a
...
parent
...
Other
...
Items
...
Closed
...
- The
...
- defects
...
- in
...
- the
...
- following
...
- list
...
- were
...
- not
...
- reproducible,
...
- some
...
- of
...
- these
...
- were
...
- deemed
...
- fixed
...
- as
...
- a
...
- by-product
...
- of
...
- refactoring.
...
8947
...
Modal
...
dialog
...
does
...
not
...
stay
...
on
...
top
...
13856
...
When
...
client
...
left
...
open,
...
log
...
file
...
grew
...
to
...
4
...
GB
...
18987
...
Cannot
...
close
...
project
...
using
...
File
...
menu
...
19292
...
Prompt
...
-
...
Doesn't
...
display
...
changes
...
in
...
User
...
tab
...
19569
...
ArrayIndexOutOfBoundsException
...
when
...
you
...
edit
...
concept
...
for
...
a
...
package
...
with
...
a
...
New
...
change
...
proposal
...
20073
...
Unable
...
to
...
create
...
a
...
new
...
class.
...
20125
...
After
...
editing
...
for
...
a
...
while
...
the
...
Lucene
...
menu
...
at
...
the
...
top
...
gets
...
multiplied
...
20625
...
Export
...
to
...
WIKI
...
fails
...
21445
...
Dragging
...
a
...
preretired
...
concept
...
into
...
retire
...
pane
...
shows
...
a
...
message
...
'Concept
...
has
...
not
...
been
...
flagged
...
for
...
retirement'.
...
21484
...
Cannot
...
retire
...
a
...
concept.
...
21645
...
Errors
...
at
...
export
...
in
...
ADQ
...
- The
...
- defects
...
- in
...
- the
...
- following
...
- list
...
- were
...
- either
...
- considered
...
- invalid
...
- or
...
- did
...
- not
...
- require
...
- a
...
- fix
...
8608
...
Add
...
Cut,
...
Copy,
...
and
...
Paste
...
options
...
to
...
main
...
tree
...
that
...
modifies
...
Superclass
...
8918
...
Allows
...
paste
...
of
...
Preferred
...
Name
...
but
...
can
...
not
...
delete
...
11600
...
Automatically
...
switches
...
Restriction
...
when
...
select
...
a
...
Restriction
...
Property
...
15182
...
Removal
...
of
...
XML
...
tags
...
from
...
query
...
export
...
17144
...
Definition
...
under
...
the
...
Edit
...
tab
...
not
...
visible
...
when
...
you
...
choose
...
CDE/Motif
...
and
...
Window
...
under
...
Look
...
and
...
Feel
...
17571
...
Search
...
under
...
the
...
Class
...
browser
...
is
...
not
...
cleared
...
after
...
the
...
search
...
is
...
done.
...
17926
...
Ontology
...
imports
...
cause
...
data
...
problems
...
when
...
loading
...
the
...
explanation
...
server
...
from
...
a
...
Protege
...
database
...
18583
...
Hierarchy
...
View
...
too
...
cluttered
...
19383
...
Problems
...
configuring
...
the
...
LQP
...
19595
...
Welcome
...
to
...
Protege
...
User's
...
Guide
...
link
...
goes
...
to
...
the
...
Geek
...
20300
...
PATO
...
concepts
...
not
...
found
...
when
...
criteria
...
has
...
'Exact
...
match'
...
but
...
found
...
with
...
criteria
...
'contains'.
...
20475
...
Exception
...
while
...
adding
...
property
...
(right-click
...
-
...
Add
...
Property)
...
in
...
the
...
copy
...
tab.
...
20480
...
Expanding
...
OWL:Thing
...
using
...
right
...
click
...
menu
...
21084
...
Changes
...
tab
...
displays
...
edits
...
even
...
after
...
cleaning
...
the
...
changes
...
ontology.
...
21541
...
Prompt
...
log
...
output
...
is
...
acting
...
differently
...
than
...
expected
...
21624
...
Associations
...
pointing
...
to
...
PATO
...
concepts
...
display
...
ID
...
not
...
name
...
CORE
...
Product
...
Dependencies
...
No
...
caCORE
...
dependencies.
...
This
...
software
...
is
...
used
...
for
...
editing
...
and
...
maintaining
...
NCI
...
Thesaurus
...
and
...
BiomedGT.
...
Release
...
History
...
Release | Date |
|---|---|
1.0 |
...
Jun |
...
07 |
...
1.1 |
...
Sept |
...
07 |
...
1.2.0 |
...
Dec |
...
07 |
...
1.2.1 |
...
Feb |
...
08 |
...
1.2.2 |
...
May |
...
08 |
...
1.2.3 |
...
Jul |
...
08 |
...
1.2.3 |
...
Patch |
...
Aug |
...
08 |
...
1.3.0 |
...
Mar |
...
09 |
...
1.4.0 |
...
Sep |
...
09 |
| Scrollbar | ||
|---|---|---|
|
