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Page History
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| Project | Goal | Assigned to | Accomplished? | |||||||||||||||||||||||||||||||||||||||||
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| 1 | ICDC | Complete the following ICDC prototype views: Dash board view, Study, Study detailed, Case, Case detailed, Program and Program detailed views. | Dimitri/Ajay | Create schematics and a design document to access data files - formalize how this is going to work | Dimitri | Work still in progress. | ||||||||||||||||||||||||||||||||||||||
| 2 | ICDC | Create a sustainable style guide for user interface | Dimitri | Done, but still work in progress. | ||||||||||||||||||||||||||||||||||||||||
| 3 | ICDC | Create All cases view to display the case using GraphQL API | Ajay | Done. | ||||||||||||||||||||||||||||||||||||||||
| 4 | ICDC | Implement a 404 error page and re position header logos | Ajay | Done. | ||||||||||||||||||||||||||||||||||||||||
| 5 | ICDC | Create GraphQL query for: dashboard, program details, cases of study, files of study, aliquotes of study,files of sample, files of cases, and samples of study | Yizhen | Done, but QA not done. | ||||||||||||||||||||||||||||||||||||||||
| 6 | ICDC | Validate input data against data model, give detailed error messages if any, only load data if passed validation. | Ming | Done. | ||||||||||||||||||||||||||||||||||||||||
| 7 | ICDC | Data loader should be able to read inputs file from a given S3 bucket. | Ming | Done. | ||||||||||||||||||||||||||||||||||||||||
| 8 | ICDC | Re-configure the existing NCATS data transformation such that it outputs Neo4J-ready loading files, and generate the appropriate .txt loading files. | Kevin | Done. | ||||||||||||||||||||||||||||||||||||||||
| 9 | ICDC | Update the data model so as to completely remove the Evaluation node and its relationships: | Phil | Done. | ||||||||||||||||||||||||||||||||||||||||
| 10 | ICDC | Re-transform and load COTC007B Course Initiation data into Neo4J | Phil | Done. | ||||||||||||||||||||||||||||||||||||||||
| 11 | ICDC | Re-configure the existing transformations for longitudinal medical observations from COTC007B into Neo4J-ready loading files, and generate the appropriate .txt loading files for Physical Exam, Vital Signs and Extent of Disease records. | Phil | Done. | ||||||||||||||||||||||||||||||||||||||||
| 12 | ICDC | Investigate parallel Pentaho-based transformation of grouped source files | Kevin | Done. | ||||||||||||||||||||||||||||||||||||||||
| 13 | ICDC | Load longitudinal medical observations from COTC007B , COTC010, and COTC018 studies into Neo4J. | Kevin, Phil, Claire | Done. | ||||||||||||||||||||||||||||||||||||||||
| 14 | ICDC | Define Authentication and Authorization Workflow using Fence | Amit | Partially done. | ||||||||||||||||||||||||||||||||||||||||
| 15 | ICDC | Load NCATS data directly into Neo4J database | Kevin | Done. | ||||||||||||||||||||||||||||||||||||||||
| 16 | ICDC | Impose constraints upon NCATS-related fields within ICDC Sample | Phil | Done. | ||||||||||||||||||||||||||||||||||||||||
| 17 | ICDC | Automatically create visit records using Neo4J loader | Ming | Done. | ||||||||||||||||||||||||||||||||||||||||
| 18 | ICDC | mapping all properties to BRIDG entities | Phil | On going - need to get document from Wendy and put on Box. | ||||||||||||||||||||||||||||||||||||||||
| 19 | ICDC | Test newly-imposed constraints around NCATS-related fields | Phil | Next sprint - needed validation tool. | ||||||||||||||||||||||||||||||||||||||||
| 20 | ICDC | ES Lint implementation | Ajay | In progress. | ||||||||||||||||||||||||||||||||||||||||
| 21 | ICDC | Create sidebar presentation with Checkboxes | Ajay | Done. | 2 | ICDC/CTN | Implement the first integration between front end - back end | Dimitri/Ajay/Yizhen/Ming | 3 | ICDC/CTN | Load data with integrated Pentaho and Neo4j | Ming | 4 | ICDC/CTN | Evaluate integration of centralized fence and indexd | Amit/Ye | 5 | ICDC | Confirm with Erika about Google + eraCommon for fence | Matt | 6 | ICDC/CTN | setup newrelic with ICDC dev instances | DevOps | 7 | ICDC/CTN | refresh neo4j database | DevOps | 8 | ICDC | setup constraints for NCATS data | Phil | 9 | CTN | Performing preliminary review of CTN data | Phil | 10 | ICDC/CTN | Establish data ingestion policy | Mark | 11 | ICDC/CTN | Complete Neo4J training | All |
Retrospective Results
What went well
| Description | Author |
|---|---|
| Claire and I learned a ton more about what Pentaho can do. We were able to not only research if pentaho can do something, but we were able actually do it. We also worked so well together. | Kevin |
| Kevin/Claire took tickets beyond expectations. Ming's validation tools works great. | Phil |
| Team is plowing through work. December goal now seems realistic. | Todd |
| Amit helped a lot by coordinating DCF/PDC to integrate Fence. | Yizhen |
| Collaboration with Kevin/Claire/Phil was really helpful in checking the numbers that the validator was using. | Ming |
| Team work was great. | Ye |
| Data work and the Portal work were awesome! | Amit |
| Amit did a great job connecting to other resources. Backend is great. Dimitri streamlined well before going on vacation. | Ajay |
| We accomplished a large amount of work. | Dimitri |
What could have gone better?
| Description | Author |
|---|---|
| Point on the tickets were underestimated. | Kevin |
| Pentaho support would be nice. | Claire |
| Better sprint goals | Phil |
| Need to improve sprint planning - look ahead a bit more. Afag's leaving should have been better accounted for. | Todd |
| Need to plan ahead a bit more - S3 vs. Jenkins loading files, for instance. | Ming |
| Sprint planning needs to be streamlined. Team leads need to take a more active role. | Ye |
| Testing needs to be streamlined. | Amit |
| Maybe we should use Webex for standups? Would streamline/standardize the process. | Ajay |
| QA integration is crucially important at this point. Versioning is becoming critical, especially as concerns the data model. | John |
Tickets
| Jira | ||||||||||
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