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Page History
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Attendees
- Dawn Duval
- Unknown User (leblancak)
- Cheryl London
- Heather Gardner
- Musk, Philip (NIH/NCI) [C]
- Unknown User (hechtt)
- Kuffel, Gina (NIH/NCI) [C]
- Jacobs, Paula (NIH/NCI) [E]
- Shaying Zhao
- Jeff Trent
Regrets: Elaine Ostrander, Erika Kim
Discussion items
Item | Who | Notes |
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Introductions | Todd |
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Committee Goals | Todd |
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Other | Todd | Next meeting: Cancel August 17th? Following meeting is September 21st.
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Minutes (Not Verbatim)
JT- Happy to give Elaine a call to confirm she would like to take the lead on drafting the Best Practices publication come mid-August
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PJ- The outline is a series of items that need to be added in order to amplify the paper.
CL- The people that are invloved involved in the existing white paper, should they be driving the process?
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CL- What is the target date for submission?
JT- October 1, 2021
TP- Did we want to take a similar approach to the variant filter file? Who will be involved? Who will lead it? Right now everyone is using a different version of a variant calling filter file, the goal is to create a universal variant calling filter file.
AL- Is there a way to come up with a unified reference genome? Can we decide which genome should be used?
HG- Each group has their own vcf filter file. I suspect there to be overlap, but we should come together and discuss the differences.
DD- It can be a bit of a moving target. We use a vcf file mostly based off the one Elaine has posted. Some of the filters are not well understood by the group.
SZ- Curating a resource would be valuable in order to decipher between somatic and germ-line mutations. This is dependent on genome best practices on how to call germ-line mutations.
Action items
- Unknown User (hechtt) to share paper about canine reference genomes
- Jeff Trent to confirm that Elaine is willing to take the lead on generating an outline for amplifying the white paper in preparation for publication.