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NCI Protégé 1.4.2 Release Notes
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National Cancer Institute Center for Bioinformatics
Protege 1.4.2 Release Notes
27 September 2010
Product Changes
The objective of this release of Protégé 1.4.2 is to provide the remaining feature requests and bugs fixes found in previous Protégé releases that have been determined to be a priority for the final release of Protege. Currently, there is no development planned after the 1.4.2 release.
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GForge number | Brief description of item |
|---|---|
(make configurable) Default search parameters for Advanced Search are not default for search w/in search | |
Prompt - accept and reject icons in 'changed by' panel of 'table' view don't work | |
Change of Focus after Retire | |
Protege incorrectly exporting names with quotes | |
Single quote mark around multi-word parents | |
Hierarchy is not refreshing the D when retire concept | |
Incorrect unretire functionality | |
Tool Tab compression and disappearance | |
search string appears empty when invoked from restriction dialog box | |
Convert project to format seems to run twice | |
Create a restriction with retired individual in premerge only | |
lucene search option falls off pull down list not sure of the trigger | |
Explanation server syncronization issue with retire action | |
protege:readOnly=true behavior is unexpected | |
Inconsistant reject button availablility | |
PROMPT Tree View reject gave null pointer exception | |
Legacy_Concept_Name is ReadOnly but will be replicated in copy/split actions | |
Legacy_Concept_Name should not transfer during merge | |
User's Guide goes to Protege 2000 page | |
Cannot change case of PT and PN | |
inheritance of role restrictions is no longer working correctly | |
Strange behavior on Preferred Name change | |
Failure of Lucene to index at runtime | |
LQT nested query causes error dialog | |
Edit of Preferred_Name does not always sync the NCI PT | |
Search using contains is very slow | |
Rejection of changes to Retired Concept branch caused deletion of newly retired classes | |
Selection of display slot for individuals is not scrollable | |
Properties that have spaces cannot be edited in the Edit tab | |
identificable? | |
SPCA contrib source | |
Error Message displays association error, yet performs edit | |
Strange output during Explanation Server restart | |
Duplicate Full Syn atom could not be deleted via NCI Editor Tab | |
unable to find concept | |
Remove hard-coding of LONG_DEFINITION and other deprecated complex properties | |
Cannot add role after editing a parent due to loss of focus in class browser | |
"Increase or Decrease Font Size" causes Edit Tab increment | |
extra prefix string when exporting ALT-DEFINITION and DEFINITION | |
report writer fails to produce output | |
EditTab not persisting complex properties correctly | |
GO_Annotation props not showing in correct panel | |
Allows duplicated roles to be added with batch processing | |
Different “Reviewer Name” is displayed | |
"Delete Parent" is allowed to delete last parent when batch processing. | |
OLD_PARENTS and OLD_ROLEs ought to be added simultaneously | |
batch delete definitions fails | |
“Required field” for FULL_SYN is not enforced when doing Batch Processing. | |
“Required field” for DEFINITION or ALT_DEFINITION is not enforced when doing Batch Processing. | |
deleting a role takes rdfs:label (preferred name) and should take rdfs:ID | |
Trouble with usage of datatype properties | |
Spotty Synchronization of NCIEditor Hierarchy with Explanation and OWLClasses Tabs | |
Enable the use of rdfs:comment | |
New strange behavior on PT change | |
Preretire fails if redirect or remove two of the same restrictions pointing to the preretiree | |
Generate Report with attributes does not display Definition or FULL_SYN | |
AQP export needs to escape comma everywhere | |
rename a class and rename it back leads to loss of type information. | |
Tabs in Edit Tab Preferences can't be removed. (Tabs in Edit Tab Preferences can't be added). | |
"Delete FULL_SYN" in batch processing doesn't work | |
Batch delete of Semantic_Type fails | |
Need to be able to configure Property Value Query in the LQP | |
Performance Issues | |
New concept with existing rdf:ID fails to be created, insufficient error message. | |
Can only shutdown protege server through the Administer Server GUI | |
There is error message when batch processing special characters "& and <" fails. | |
Classification Optimization | |
Reasoner Error While Classifying in Standalone Mode | |
New scenarios that have strange behavior on PT change | |
Performance testing | |
Preretire causes multiplication of OLD_SOURCE_ROLEs from referencing classes | |
Figure out if LQP result display timing is okay for a number of search scenarios. | |
LastUsageInvocationHandler being called with a high frequency | |
Restrictions drop off when toggling from primitive to defined related to concurrency | |
Split and Copy don't work in protege ByCode 1.4.2.174. | |
Typo in Batch Load parent causes infinitely repeating exception | |
Qualifiers of Complex Properties don't display (ByCode) | |
Legacy_Concept_Name ReadOnly works but it is passed to new concepts | |
Retired concept is not listed under Retired Concepts | |
Changing Preferred name makes 2nd rdfs:label be added. (NCIt - ByCode) | |
There is no check-box next to Retire in the "Edit Tab Preferences" | |
Cannot Edit Concept assigned in NCI Workflow (NPO) | |
java.lang.NullPointerException is displayed in console windows after check /uncheck Copy, Split, Merge, or Retire in Preference. | |
Association Edit/Delete failed. | |
Does not retain assignment of workflow task from creation dialog | |
report writer fails to produce correct output for no attributes | |
The record number in the batch log may not match with the "line number" of the input file. | |
An invalid value is able to be added into the protperty Contributing_Source by the batch processing | |
Need to use Display slot in Explanation tab panel | |
After merge, redirected filler values are not updated by the Explanation Server | |
A user was able to premerge two classes into a third class during concurrent editing | |
Duplicate restrictions after merge with restriction pointing to surviving concept | |
Invalid messagebox/warning to user when modify a concept with N&S restrictions | |
Review panel from LQT pane displays class name as "foo" | |
Exceptions are thrown when closing "Select a property" dialog-box nested in "Edit an Object-Valued Property" dialog-box. |
Other Items Closed
The defects in the following list were not reproducible, or were fixed as a by-product of refactoring, or were related to configuration setup.
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