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Data from the DTP Molecular Target program.
Email questions concerning DTP's molecular targets program to: Molecular Target Team [moltarget@mail.nih.gov]
Primary molecular target data (excluding microarray data)
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Data is provided as an Excel file listing copy number of each chromosomal band for each cell line. Download excel file
Affymetrix 125K SNP array data from the Sellers' lab Nature 436, 117-122 (2005).
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The Copy Number Data:
A 51.6 Mb zip file - The uncompressed file is approximately 307 Mb. |
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File Format: MARKER, CellID, COPYNBR, PANELNBR, CELLNBR, pname, cellname
The Allele Call Data:
ALLELECALL.ZIP | A 29.6 Mb zip file - The uncompressed file is approximately 290 Mb. |
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File Format: MARKER, CellID, AlleleCall, PANELNBR, CELLNBR, pname, cellname
The Identifiers Data:
IDENTIFIERS.ZIP | A 3.6 Mb zip file - The uncompressed file is approximately 11 Mb |
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(relative to normal female DNA) from the Weinstein (NCI) and Gray (UCSF) labs Mol Cancer Ther. 2006 Apr;5(4):853-67.)
CGH_COPYNUM.ZIP | A 105 Kb zip file - The uncompressed file is approximately 1.0 Mb |
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Data was processed with the Affymetrix MAS5 algorith, with a scaling factor of 100.
WEB_DATA_CHIRON.ZIP | A 21.9 Mb zip file - The uncompressed file is approximately 305 Mb |
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Data was processed with the Affymetrix MAS5 algorith, with a scaling factor of 100.
WEB_DATA_GENELOGIC_U133.ZIP | A 26.0 Mb zip file - The uncompressed file is approximately 314 Mb |
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Microarray data - Affymetrix U95 array data from Gene Logic, Inc.
WEB_DATA_GENELOGIC_U95.ZIP | A 34.1 Mb zip file - The uncompressed file is approximately 401 Mb. |
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Microarray data - Affymetrix U95A data from Novartis, averaged data (from triplicate arrays)
WEB_DATA_NOVARTIS.ZIP | A 9.4 Mb zip file - The uncompressed file is approximately 84 Mb. |
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Microarray data - Affymetrix U95A data from Novartis, data from individual arrays
WEB_DATA_NOVARTIS_ALL.ZIP - | A 26.8 Mb zip file - The uncompressed file is approximately 145 Mb. |
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Units are log2 of singal from the test cell/reference pool
WEB_DATA_STANFORD.ZIP | A 5.5 Mb zip file - The uncompressed file is approximately 60.1 Mb. |
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Microarray data - Affymetrix HUM6000 array data from Millenium Pharmaceuticals
WEB_DATA_MILLENIUM.ZIP | A 4.2 Mb zip file - The uncompressed file is approximately 47.2 Mb. |
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File Format: MOLTID (NCI pattern #), ACC, Gene, TITLE, MOLTNBR (NCI exp. id #), PANELNBR, CELLNBR, pname, cellname, CHIP, FEATURE_ID, UniGene, GeneID, VALUE Gene assignments are based on Unigene Build #U225 (August 2010)
Email questions concerning DTP's molecular targets program to: Susan Holbeck [holbecks@mail.nih.gov]