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Comment: For HPCDATAMGM-1862 & 1884: Added dbGaP (Aspera).

This user guide describes how to perform a variety of tasks in DME. In some cases, you can choose whether to perform each activity using the web application's graphical user interface (GUI) or Command Line Utilities (CLU). The  

Include Page
shared info - CLU vs GUI
shared info - CLU vs GUI

The following table compares the functionality available in each interface:

TaskGUICLU
Getting StartedGetting Started with DME GUIGetting Started with DME CLU
Finding DataBrowsing for Finding Data via the GUI

Searching for Data via the GUI

Using Search Results and Other Lists in the GUI

Saving a Search via the GUI

(Browse and search functionality are not available in the CLU.)Finding Data via the CLU
Using Bookmarks

Creating a Bookmark via the GUI

Using a Bookmark via the GUI

Deleting a Bookmark via the GUI

Adding a Bookmark via the CLU

Updating a Bookmark via the CLU

Viewing or Retrieving MetadataViewing Metadata via the GUI

Retrieving the Metadata of a Collection via the CLU

Retrieving the Metadata of a Data File via the CLU

Uploading Registering Data

Registering Data via the GUI

You can register data from the following sources:

  • Local system (one file up to 10 GB)
  • Globus 
  • AWS S3
  • Google Drive
  • Google Cloud storage

Registering Data via the CLU

You can register data from the following sources:

  • Local system
  • Globus (one file)
  • AWS S3 (one file)
  • Google Cloud storage (one file)

Downloading Data

Downloading Data via the GUI

You can download data to the following destinations:

  • Local system (one file)
  • Globus
  • AWS S3
  • Google Drive
  • Google Cloud storage
  • dbGaP (Aspera)

Downloading Data via the CLU

You can download data to the following destinations:

  • Local system (one file)
  • Globus
  • AWS S3
  • dbGaP (Aspera)
Viewing ReportsViewing Reports(Report functionality is not available in the CLU.)
Subscribing to NotificationsSubscribing to Notifications(Notification subscription functionality is not available in the CLU.)
Managing Permissions

Managing Permissions Individually via the GUI

Managing Permissions in Bulk via the GUI

Adding a Bookmark and Permissions via the CLU

Updating a Bookmark and Permissions via the CLU

Managing Users and GroupsManaging Users and Groups via the GUIManaging Users via the CLU
Deleting DataDeleting Data via the GUIDeleting Data via the CLU