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This chapter describes how to manage synthesis information in caNanoLab samples. Topics in this chapter include:Table of Contents
- If you have a read-only account, you can view, print, or export sample information. For details, refer to
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If you have a curator account associated with an existing sample, you can also add, edit, or delete information in that sample.
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You can view information in an existing sample.
Search for the sample, as described in Managing Samples in caNanoLab. The Sample Search Results page appears.
In the row for the sample you want to view, click View. The Sample page appears.
- In the Navigation Tree, click Synthesis. The Sample (sample name) Synthesis page appears.
- Select the tab for the category of information you want to view (Materials, Functionalization, or Purification), or remain on the default tab (All).
- To print the information, click Print at the top right of the page.
- To export the information to a spreadsheet, click Export at the top right of the page.
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To export all sample information to JSON or XML, refer to Managing Samples in caNanoLab. |
Adding, Editing, or Deleting Synthesis Information in a Sample
- - 2021-07-19.
- If
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- you have a curator account associated with an existing sample, you can
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Search for the sample, as described in Managing Samples in caNanoLab. The Sample Search Results page appears.
In the row for the sample you want to edit, click Edit. The Update Sample page appears.
In the Navigation Tree, click Synthesis. The Sample (sample name) Synthesis page appears.
Select the tab for the category of information you want to add or edit (Materials, Functionalization, or Purification), or remain on the default tab (All).
To add or edit an item, click Add or click Edit next to that item. The Add page or Edit page for that item appears. For details, refer to the following sections: (links TBD)
- To delete an item, click Edit next to that item. The Edit page for that item appears. Click Delete. The system moves the deleted item to the sample archive for historical purposes.
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| If you are logged in and an Add or Edit button is not available, you have read-only access to the data. |
Adding or Editing Synthesis Materials in a Sample
- In the Materials tab of the Sample (sample name) Synthesis page, click Add, or click Edit next to the item you want to edit. The Add page or Edit page for that item appears.
- (Protocol and description details TBD.)
- (Materials details TBD.)
- Add files. For details, refer to (link TBD).
- Click Update.
Adding or Editing Synthesis Functionalization in a Sample
- In the Functionalization tab of the Sample (sample name) Synthesis page, click Add, or click Edit next to the item you want to edit. The Add page or Edit page for that item appears.
- (Protocol and description details TBD.)
- (Functionalization details TBD.)
- Add files. For details, refer to (link TBD).
- Click Update.
Adding or Editing Synthesis Purification in a Sample
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In the Purification tab of the Sample (sample name) Synthesis page, click Add, or click Edit next to the item you want to edit. The Add page or Edit page for that item appears.
Fill in the information as described in the following table:
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Fill in the general information about the purification.
Select a Purification Type. (TBD: Do we need to provide guidance for choosing interim or final?)
Select a Protocol. (TBD: No values show up in this drop-down list for me. Do we need to provide guidance for choosing a value?)
Specify the Yield. (TBD: Do we need to provide guidance for specifying a value?)
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Click Add to expand the section. Add data findings and supporting documentation relating to the purification. Import as many .csv files as you wish or add derived data manually. For details, refer to (link TBD).
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- also add, edit, or delete information in that sample.
This chapter includes the following topics.
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Defining Purification Techniques and Instruments
When you are adding purification information, fill in the following design, methods, and techniques used.
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Design and Methods Description
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Enter a description for the purification design and methods.
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If you include an extra line between text in the Design and Methods Description, the line separation is preserved when you save or update the purification information. |
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Technique and Instruments
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Technique*
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When you are finished, click Save.
Adding Data Findings to Synthesis Purification
To add findings to purification information, you can add data directly to Data and Conditions by creating columns and adding data manually or you can import as many .csv files as needed. Information can include laboratory conditions, pH, or temperature. You can add as many files as you wish.
Add data values to Data and Conditions.
To import a file of data values
Save the spreadsheet of data values to a csv (comma-separated value) file.
Click Import csv and select and follow the prompts to add the data file to the Findings Info.
The columns and data are added to Data and Conditions.
To add the data values manually
Specify the number of columns and rows for the matrix, and click Update.
Add the data values to the rows.
Whether you imported or added information manually, you can preface each data value with one of the following: Maintain the default, equal to (=), or select greater than (>), less than (<), or infinity (approximate).
- To define a column, click an underlined column heading.
The Column Definition panel displays. - Select a Column Type, Datum or Condition.
Select a Column Name or select other and add a new one. You can add up to three cell viability Column Names, including cell viability, cell viability B, and cell viability C. You can further identify the column with the Column Value Type.
For Column Type Datum, (Column Name options TBD).
For Column Type Condition, (Column Name options TBD).
To further identify a column, select a Column Value Type. Once the column information is saved, the Column Type is shown in parentheses after the Column Name, such as cell viability (mean).
- Select a Column Value Unit, or select other and add one.
If you want the same value to fill all rows in a column, add a Constant Value. For Column Value Type, boolean, enter a Constant Value of 1 for true and 0 for false.
Click Save. The system updates the columns. If needed, click Set Column Order to change the order of the column headings in the matrix.
- Click Save in the Finding section.
Adding Supporting Documents to a Sample
You can add supporting documents to a sample. You can add as many files as you wish.
To add each file
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- For Upload, click Choose File. Browse to the file and select it.
- Otherwise, enter the file's URL where the document is located.
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- Select the File Type (required): Document, Graph, Image, Movie, PDF, or Spreadsheet.
- Enter the File Title (required).
- Specify Keywords to associate with the file.
- Enter a Description of the file or additional information.
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