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Page History
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Note: This collection has been migrated to The Cancer Imaging Archive (TCIA) . Please note the collection name was changed from VASARI to REMBRANDT when posted to TCIA to help clarify its connection with the non-imaging data hosted in the REMBRANDT Data Portal. Read more about this collection on the TCIA REMBRANDT wiki page. |
Summary
VASARI currently consists of image data from Thomas Jefferson University (TJU) and Henry Ford, as well as some annotations performed by 3 of TJU's radiologists while reviewing the TJU images. This 130 case MR multi-sequence image collection of pre-surgical brain tumor patients can be matched by each unique case identifier with the extensive gene and expression data of the same case available from the REMBRANDT Data Portal to research the link between radiological phenotype and tissue genotype. This genetically profiled MRI collection contains numerous cases of glioblastoma, astrocytomas and oligodendrogliomas.
- VASARI_MR_featurekey4_508_compliant.pdf - This document is a "key" for understanding and interpreting the annotation spreadsheet
- VASARI_MRI_features _(gmdi-wiki)_508_compliant.xls - This document is the actual annotations spreadsheet generated at TJU
Data Access
Collection Statistics | Value |
|---|---|
Modalities | MR |
Number of Patients | 130 |
Number of Studies | 174 |
Number of Series | 1,483 |
Number of Images | 110,020 |
Summary
VASARI is a data set from TJU being coordinated by Adam Flanders. In addition to the raw image data he also generated some annotations about the data. Finally, there is also some work being done to load the collective data set into caIntegrator 2 including these annotations as well as connectivity to NBIA for th eimages.
Accrual Summary
Submission Software - Clinical Trial Processor (CTP)
De-identification Schema - *insert da.script*
Collection Security - Publicly available to all registered users
Collection status - Pending
Modality types - MR
Contact Sites - TJU
Accrual Details
4/14/09 - Tcon held last Friday. NCI to setup CTP for Adam and notify him when ready. Will then coordinate time with Adam to begin submission week of 4/20 - 4/24
caIntegrator Vasari Project
caIntegrator2 Team Members:
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